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Report for CCDS26565.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26565.1 Public Mus musculus 13 Smad5 23 108 98 CCDS HistoryNCBI Gene:17129Re-query CCDS DB by CCDS ID:26565.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26565.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000069557.13 ENSMUSP00000065798.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000069557.13Link to Ensembl Protein Viewer:ENSMUSP00000065798.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000069557Re-query CCDS DB by Protein ID:ENSMUSP00000065798
Original member Current member EBI ENSMUST00000109874.1 ENSMUSP00000105500.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109874.1Link to Ensembl Protein Viewer:ENSMUSP00000105500.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000109874Re-query CCDS DB by Protein ID:ENSMUSP00000105500
Original member Current member EBI ENSMUST00000109876.7 ENSMUSP00000105502.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109876.7Link to Ensembl Protein Viewer:ENSMUSP00000105502.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000109876Re-query CCDS DB by Protein ID:ENSMUSP00000105502
Original member Current member NCBI NM_001164041.1 NP_001157513.1 Accepted alive Link to Nucleotide Sequence:NM_001164041.1Link to Protein Sequence:NP_001157513.1Re-query CCDS DB by Nucleotide ID:NM_001164041Re-query CCDS DB by Protein ID:NP_001157513Link to BLAST:NP_001157513.1
Original member Current member NCBI NM_001164042.1 NP_001157514.1 Accepted alive Link to Nucleotide Sequence:NM_001164042.1Link to Protein Sequence:NP_001157514.1Re-query CCDS DB by Nucleotide ID:NM_001164042Re-query CCDS DB by Protein ID:NP_001157514Link to BLAST:NP_001157514.1
Original member Current member NCBI NM_008541.3 NP_032567.1 Accepted alive Link to Nucleotide Sequence:NM_008541.3Link to Protein Sequence:NP_032567.1Re-query CCDS DB by Nucleotide ID:NM_008541Re-query CCDS DB by Protein ID:NP_032567Link to BLAST:NP_032567.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157513.1 465 P97454 465 100% 0 0
NP_001157514.1 465 P97454 465 100% 0 0
NP_032567.1 465 P97454 465 100% 0 0

Chromosomal Locations for CCDS 26565.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 56723594 56723996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 56727404 56727655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 56728510 56728629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 56732850 56733071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 56735800 56736056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 56737335 56737478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1398 nt):
ATGACGTCAATGGCCAGCTTGTTTTCTTTCACTAGTCCAGCCGTGAAGCGATTGTTGGGCTGGAAACAAG
GTGACGAGGAAGAGAAATGGGCAGAAAAGGCAGTGGATGCTTTAGTGAAAAAGCTGAAGAAGAAGAAGGG
TGCTATGGAGGAGCTGGAGAAAGCCTTGAGCAGCCCAGGACAGCCAAGCAAGTGTGTCACGATCCCCAGG
TCCTTGGATGGACGTCTGCAAGTTTCTCACAGGAAAGGCTTGCCCCATGTTATATATTGCCGTGTTTGGC
GCTGGCCAGATTTGCAGAGCCATCACGAGCTAAAACCATTGGATATTTGTGAATTTCCTTTTGGATCTAA
GCAAAAGGAAGTTTGTATCAATCCATACCACTATAAGAGAGTGGAGAGTCCAGTCTTACCTCCAGTATTA
GTGCCTCGTCACAATGAATTCAATCCACAACACAGCCTTCTGGTTCAGTTCAGGAACCTGAGCCACAATG
AACCGCACATGCCACAAAACGCCACGTTTCCCGATTCTTTCCACCAACCCAACAACGCTCCTTTCCCCTT
ATCTCCTAACAGCCCCTATCCTCCTTCCCCTGCTAGCAGCACATATCCCAACTCCCCAGCAAGCTCTGGA
CCTGGAAGTCCATTTCAACTCCCAGCTGACACCCCTCCCCCTGCCTATATGCCACCTGATGATCAGATGG
CCCCAGATAATTCCCAGCCTATGGATACAAGCAGTAACATGATTCCTCAGACCATGCCCAGCATATCCAG
CAGAGATGTTCAGCCTGTCGCCTATGAGGAGCCCAAACACTGGTGTTCGATTGTCTACTATGAATTAAAC
AATCGTGTTGGGGAAGCTTTTCATGCATCTTCTACTAGTGTGTTAGTAGATGGATTTACAGATCCTTCAA
ATAACAAAAGTAGATTCTGCCTGGGATTGTTGTCAAATGTTAATCGTAATTCAACTATTGAAAACACTAG
GCGGCATATTGGAAAAGGTGTTCATCTATACTACGTTGGTGGGGAGGTGTACGCTGAGTGTCTTAGTGAC
AGCAGCATCTTTGTTCAGAGTAGGAACTGCAACTTTCACCATGGCTTCCATCCCACCACCGTCTGTAAGA
TCCCCAGCAGCTGCAGCCTCAAGATTTTTAACAATCAGGAGTTTGCTCAGCTTCTGGCTCAGTCAGTCAA
CCATGGATTCGAGGCTGTGTATGAGCTCACCAAGATGTGTACCATTCGAATGAGCTTTGTCAAGGGCTGG
GGAGCAGAGTACCACCGACAGGACGTCACCAGTACTCCCTGCTGGATTGAGATTCACCTCCACGGGCCTC
TGCAGTGGCTGGATAAAGTCCTTACTCAGATGGGCTCTCCGCTGAACCCCATTTCTTCTGTTTCATAG

Translation (465 aa):
MTSMASLFSFTSPAVKRLLGWKQGDEEEKWAEKAVDALVKKLKKKKGAMEELEKALSSPGQPSKCVTIPR
SLDGRLQVSHRKGLPHVIYCRVWRWPDLQSHHELKPLDICEFPFGSKQKEVCINPYHYKRVESPVLPPVL
VPRHNEFNPQHSLLVQFRNLSHNEPHMPQNATFPDSFHQPNNAPFPLSPNSPYPPSPASSTYPNSPASSG
PGSPFQLPADTPPPAYMPPDDQMAPDNSQPMDTSSNMIPQTMPSISSRDVQPVAYEEPKHWCSIVYYELN
NRVGEAFHASSTSVLVDGFTDPSNNKSRFCLGLLSNVNRNSTIENTRRHIGKGVHLYYVGGEVYAECLSD
SSIFVQSRNCNFHHGFHPTTVCKIPSSCSLKIFNNQEFAQLLAQSVNHGFEAVYELTKMCTIRMSFVKGW
GAEYHRQDVTSTPCWIEIHLHGPLQWLDKVLTQMGSPLNPISSVS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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