NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Tuesday, April 30, 2024, starting at 9:30 a.m. EDT for up to 60 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS20422.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20422.1 Public Mus musculus 6 Il17rc 23 108 98 CCDS HistoryNCBI Gene:171095Re-query CCDS DB by CCDS ID:20422.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20422.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000058300.13 ENSMUSP00000055343.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000058300.13Link to Ensembl Protein Viewer:ENSMUSP00000055343.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000058300Re-query CCDS DB by Protein ID:ENSMUSP00000055343
Original member Current member NCBI NM_134159.4 NP_598920.3 Accepted alive Link to Nucleotide Sequence:NM_134159.4Link to Protein Sequence:NP_598920.3Re-query CCDS DB by Nucleotide ID:NM_134159Re-query CCDS DB by Protein ID:NP_598920Link to BLAST:NP_598920.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598920.3 674 Q8K4C2-1 674 100% 0 0

Chromosomal Locations for CCDS 20422.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 113471683 113471787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113472071 113472092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113472231 113472383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113472627 113472689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113472778 113472887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113474161 113474272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113476426 113476538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113476735 113476794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113478864 113478918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113478989 113479170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113479251 113479301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113480130 113480175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113480306 113480427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113480758 113480817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113481184 113481235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113482283 113482378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113482497 113483119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2025 nt):
ATGCCTGTGTCCTGGTTCCTGCTGTCCTTGGCACTGGGCCGAAACCCTGTGGTCGTCTCTCTGGAGAGAC
TGATGGAGCCTCAGGACACTGCACGCTGCTCTCTAGGCCTCTCCTGCCACCTCTGGGATGGTGACGTGCT
CTGCCTGCCTGGAAGCCTCCAGTCTGCCCCAGGCCCTGTGCTAGTGCCTACCCGCCTGCAGACGGAGCTG
GTGCTGAGGTGTCCACAGAAGACAGATTGCGCCCTCTGTGTCCGTGTGGTGGTCCACTTGGCCGTGCATG
GGCACTGGGCAGAGCCTGAAGAAGCTGGAAAGTCTGATTCAGAACTCCAGGAGTCTAGGAACGCCTCTCT
CCAGGCCCAGGTGGTGCTCTCCTTCCAGGCCTACCCCATCGCCCGCTGTGCCCTGCTGGAGGTCCAGGTG
CCCGCTGACCTGGTGCAGCCTGGTCAGTCCGTGGGTTCTGCGGTATTTGACTGTTTCGAGGCTAGTCTTG
GGGCTGAGGTACAGATCTGGTCCTACACGAAGCCCAGGTACCAGAAAGAGCTCAACCTCACACAGCAGCT
GCCTGATGGTGACAATGTCCTTCTGACACTGGATGTCTCTGAGGAGCAGGACTTTAGCTTCTTACTGTAC
CTGCGTCCAGTCCCGGATGCTCTCAAATCCTTGTGGTACAAAAACCTGACTGGACCTCAGAACATTACTT
TAAACCACACAGACCTGGTTCCCTGCCTCTGCATTCAGGTGTGGTCGCTAGAGCCAGACTCTGAGAGGGT
CGAATTCTGCCCCTTCCGGGAAGATCCCGGTGCACACAGGAACCTCTGGCACATAGCCAGGCTGCGGGTA
CTGTCCCCAGGGGTATGGCAGCTAGATGCGCCTTGCTGTCTGCCGGGCAAGGTAACACTGTGCTGGCAGG
CACCAGACCAGAGTCCCTGCCAGCCACTTGTGCCACCAGTGCCCCAGAAGAACGCCACTGTGAATGAGCC
ACAAGATTTCCAGTTGGTGGCAGGCCACCCCAACCTCTGTGTCCAGGTGAGCACCTGGGAGAAGGTTCAG
CTGCAAGCGTGCTTGTGGGCTGACTCCTTGGGGCCCTTCAAGGATGATATGCTGTTAGTGGAGATGAAAA
CCGGCCTCAACAACACATCAGTCTGTGCCTTGGAACCCAGTGGCTGTACACCACTGCCCAGCATGGCCTC
CACGAGAGCTGCTCGCCTGGGAGAGGAGTTGCTGCAAGACTTCCGATCACACCAGTGTATGCAGCTGTGG
AACGATGACAACATGGGATCGCTATGGGCCTGCCCCATGGACAAGTACATCCACAGGCGCTGGGTCCTAG
TATGGCTGGCCTGCCTACTCTTGGCTGCGGCGCTTTTCTTCTTCCTCCTTCTAAAAAAGGACCGCAGGAA
AGCGGCCCGTGGCTCCCGCACGGCCTTGCTCCTCCACTCCGCCGACGGAGCGGGCTACGAGCGTCTGGTG
GGAGCACTGGCGTCCGCGTTGAGCCAGATGCCACTGCGCGTGGCCGTGGACCTGTGGAGCCGCCGCGAGC
TGAGCGCGCACGGAGCCCTAGCCTGGTTCCACCACCAGCGACGCCGTATCCTGCAGGAGGGTGGCGTGGT
AATCCTTCTCTTCTCGCCCGCGGCCGTGGCGCAGTGTCAGCAGTGGCTGCAGCTCCAGACAGTGGAGCCC
GGGCCGCATGACGCCCTCGCCGCCTGGCTCAGCTGCGTGCTACCCGATTTCCTGCAAGGCCGGGCGACCG
GCCGCTACGTCGGGGTCTACTTCGACGGGCTGCTGCACCCAGACTCTGTGCCCTCCCCGTTCCGCGTCGC
CCCGCTCTTCTCCCTGCCCTCGCAGCTGCCGGCTTTCCTGGATGCACTGCAGGGAGGCTGCTCCACTTCC
GCGGGGCGACCCGCGGACCGGGTGGAACGAGTGACCCAGGCGCTGCGGTCCGCCCTGGACAGCTGTACTT
CTAGCTCGGAAGCCCCAGGCTGCTGCGAGGAATGGGACCTGGGACCCTGCACTACACTAGAATAA

Translation (674 aa):
MPVSWFLLSLALGRNPVVVSLERLMEPQDTARCSLGLSCHLWDGDVLCLPGSLQSAPGPVLVPTRLQTEL
VLRCPQKTDCALCVRVVVHLAVHGHWAEPEEAGKSDSELQESRNASLQAQVVLSFQAYPIARCALLEVQV
PADLVQPGQSVGSAVFDCFEASLGAEVQIWSYTKPRYQKELNLTQQLPDGDNVLLTLDVSEEQDFSFLLY
LRPVPDALKSLWYKNLTGPQNITLNHTDLVPCLCIQVWSLEPDSERVEFCPFREDPGAHRNLWHIARLRV
LSPGVWQLDAPCCLPGKVTLCWQAPDQSPCQPLVPPVPQKNATVNEPQDFQLVAGHPNLCVQVSTWEKVQ
LQACLWADSLGPFKDDMLLVEMKTGLNNTSVCALEPSGCTPLPSMASTRAARLGEELLQDFRSHQCMQLW
NDDNMGSLWACPMDKYIHRRWVLVWLACLLLAAALFFFLLLKKDRRKAARGSRTALLLHSADGAGYERLV
GALASALSQMPLRVAVDLWSRRELSAHGALAWFHHQRRRILQEGGVVILLFSPAAVAQCQQWLQLQTVEP
GPHDALAAWLSCVLPDFLQGRATGRYVGVYFDGLLHPDSVPSPFRVAPLFSLPSQLPAFLDALQGGCSTS
AGRPADRVERVTQALRSALDSCTSSSEAPGCCEEWDLGPCTTLE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH