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Report for CCDS14861.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14861.1 Public Mus musculus 1 Khdrbs2 23 108 98 CCDS HistoryNCBI Gene:170771Re-query CCDS DB by CCDS ID:14861.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14861.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027226.11 ENSMUSP00000027226.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027226.11Link to Ensembl Protein Viewer:ENSMUSP00000027226.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000027226Re-query CCDS DB by Protein ID:ENSMUSP00000027226
Original member Current member NCBI NM_133235.3 NP_573498.1 Accepted alive Link to Nucleotide Sequence:NM_133235.3Link to Protein Sequence:NP_573498.1Re-query CCDS DB by Nucleotide ID:NM_133235Re-query CCDS DB by Protein ID:NP_573498Link to BLAST:NP_573498.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_573498.1 349 Q9WU01-1 349 100% 0 0

Chromosomal Locations for CCDS 14861.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 32172918 32173008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 32243900 32244027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 32333466 32333582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 32414871 32415017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 32467760 32467887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 32472567 32472765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 32619171 32619253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 32644093 32644151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 32657444 32657541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1050 nt):
ATGGGAGAAGAGAAATACTTGCCTGAGCTGATGGCAGAGAAGGATAGCCTGGATCCATCTTTTGTGCACG
CGTCGCGCCTTCTGGCGGAAGAAATTGAGAAATTTCAAGGTTCAGATGGGAAAAAGGAAGATGAAGAAAA
GAAATATCTCGATGTCATCAGCAACAAAAACATAAAGCTCTCTGAAAGAGTATTGATTCCTGTGAAACAG
TATCCAAAGTTCAATTTTGTGGGGAAATTGCTTGGACCAAGAGGAAACTCCTTGAAGAGGCTACAAGAAG
AAACGGGTGCTAAAATGTCTATCCTGGGCAAAGGGTCCATGCGAGATAAGACAAAGGAAGAAGAGCTGAG
GAAGAGTGGGGAGGCCAAGTATGCCCACCTGAGTGATGAGCTGCATGTATTAATTGAAGTGTTTGCTCCA
CCCGGGGAAGCTTATTCACGGATGAGTCATGCCTTGGAAGAGATTAAAAAATTCCTGGTTCCTGACTACA
ATGATGAAATTCGTCAAGAGCAACTCCGGGAGTTGTCTTACTTGAATGGCTCAGAAGAGTCTGGCCGGGG
CCGAGGTATTAGAGGCAGAGGGATCAGAATAACTCCCACAGCTCCATCAAGGGGCCGTGGCGGTGCTGTT
CCACCACCACCACCACCTGGACGAGGTGTGCTTACCCCTCGGGGGACCACTGTGACCCGTGGAGCTCTTC
CAGTGCCCCCAATAGCAAGAGGTGTCCCCACACCTCGAGCCCGGGGGACGGCAGCAGTACCAGGATACAG
AGCACCCCCACCTCCAGCTCATGATGCTTATGAAGAATATGGGTATGATGATGGCTATGGGGGTGAATAT
GATGACCAGACCTATGAGGCTTATGATAATAGCTACGTGACCCCAACACAAAGTGTGCCTGAATACTATG
ACTACGGTCATGGAGTAAACGAGGATGCCTACGACAGCTACGCACCAGAAGAATGGGCCACAACTCGCTC
CAGCCTGAAGGCACCACCACCAAGGTCAGCCAGAGGGGGATACAGGGAGCACCCCTATGGTAGATATTGA

Translation (349 aa):
MGEEKYLPELMAEKDSLDPSFVHASRLLAEEIEKFQGSDGKKEDEEKKYLDVISNKNIKLSERVLIPVKQ
YPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKTKEEELRKSGEAKYAHLSDELHVLIEVFAP
PGEAYSRMSHALEEIKKFLVPDYNDEIRQEQLRELSYLNGSEESGRGRGIRGRGIRITPTAPSRGRGGAV
PPPPPPGRGVLTPRGTTVTRGALPVPPIARGVPTPRARGTAAVPGYRAPPPPAHDAYEEYGYDDGYGGEY
DDQTYEAYDNSYVTPTQSVPEYYDYGHGVNEDAYDSYAPEEWATTRSSLKAPPPRSARGGYREHPYGRY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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