NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS25715.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25715.1 Public Mus musculus 11 Card14 23 108 98 CCDS HistoryNCBI Gene:170720Re-query CCDS DB by CCDS ID:25715.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25715.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000053245.6 ENSMUSP00000053665.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000053245.6Link to Ensembl Protein Viewer:ENSMUSP00000053665.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000053245Re-query CCDS DB by Protein ID:ENSMUSP00000053665
Original member Current member EBI ENSMUST00000106250.7 ENSMUSP00000101857.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106250.7Link to Ensembl Protein Viewer:ENSMUSP00000101857.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106250Re-query CCDS DB by Protein ID:ENSMUSP00000101857
Original member Current member NCBI NM_130886.4 NP_570956.1 Accepted alive Link to Nucleotide Sequence:NM_130886.4Link to Protein Sequence:NP_570956.1Re-query CCDS DB by Nucleotide ID:NM_130886Re-query CCDS DB by Protein ID:NP_570956Link to BLAST:NP_570956.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_570956.1 999 Q99KF0 999 100% 0 0

Chromosomal Locations for CCDS 25715.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 119317106 119317316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119321823 119321960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119322578 119322903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119324131 119324298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119325438 119325557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119326055 119326180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119326632 119326781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119328476 119328592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119331237 119331379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119331529 119331617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119333547 119333607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119333798 119333990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119337692 119337818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119338235 119338472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119338872 119338935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119339575 119339686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119340991 119341164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119343143 119343264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119343895 119344010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119344537 119344741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3000 nt):
ATGGCAGAACTGTGCCGCATGGATTCCACACTGACTGCTCTGGACGAGGAGATGCTCTGGGATATGCTGG
AGAGTCACCGATGCAGGATTGTGCAGAGCATCTGCCCTAGCCGGCTCACCCCCTACCTGCGCCAGGCCAA
GGTGCTGGGCCAGCTGGACGAGGAGGAGATCCTGCATAGCTCCCGTTTCACCAACAGTGCCATGAGAGTT
GGGCACTTGCTGGATCTGCTAAAGGCCCGAGGGAAGAATGGAGCCATTGCCTTTCTGGAAAGCCTGAAGT
TCCACAACCCTGATGTCTACACCCTGGTCACTGGGCTGCAGTCTGACATTGACTTCAGCACTTTCAGCGG
TCTCATGGAGACATCCAAGCTGACCGAGTGTCTGGCTGGGGCCATCAGCAGCCTGCAGGAGGAGCTGGCC
CAGGAGAAGGCACAGAAGGAGGTTCTGCTCCGGAGATGCCAGCAGCTGAAGGAGCGCCTGGGCTTGGCTG
AGGCTCACGCAGAAGGTCTGCGCCAGCTGGAGGTCGACCACAGCCGCATGAAACGTGAGGTCAGCACCCA
CTTCCACGAGGTCCTGAAACTGAAGGACGAGATGCTGAACCTGTCACTGCACTACAGCAACGCACTCAGA
GAGAAGGAGCTGGCTGCCACACGCTGCCACAGCCTTCAGGAAGAGCTCTACCTGGTGAAGCAGGAACTCC
AGCGAGCAAGCCTTGTATCGTCATGTGAAAGAGAATCTCGAGAGAGGTCCCTGAAGATGGCCAGCAACCT
GGAGCCTCAGGGAGAAGAACTAAATCGGCTTAAGGAGGAGAATGAGAAACTCCGCTCCATGACCTTCAGC
CTGGTGGAGAAGGACATTCTGGAACAGAGTCTGGATGAGGCCAGGGAGAGCAAGCAAGAGCTGGTGGACC
GCATCCACTCACTGCGGGAGAGAGCAGTGGCCGCGGAGAGGCAGCAGAAGCAGTACTGGGAGGAGAAGGA
ACAGACCCTACTCCAGTTCCGGAAGACACAGGTGGACTGTGAACTATACAAAGAAAAGATGACCATGCTT
CAGGGCCAGGTGGCTGAGCTGCAGAAGGAACGTGACCAGGCATACACAGCAAGGGACAGGGCCCAGATGG
AGATTTCTCAGCGCCTGGTGGAGAAGGATGCCCTTCGCAGGAGAGTGTTCGAGCTGACGGAGCAGGTCTG
TGAGCTGCGTACTCAGCTGCGCAGGCTGCAGGCGGAGGCCCCAGGAGGACCCAAGCAGGAAGCCGGAGCC
AGGGAACTCTGCCTCCGGGGGAAGCAGAGGCTTGTGCGGATGCATGCTGTGTGCCCACCAGATGACAGTG
ACTGCAGCCTCCTCAGCTCCACAGAGTCCCGGCTGTGGTGGGACCTGAATTCCACATCCAGCCGGGAGCA
GATGGACAGCTTCCGCTCCAGCAGCCCCATGCCTCCCAGCCAGCAGTCCCTGTACAAGCGGGTGGCAGAG
GACTTCCTGGAAGACCCCGAGTCTCTAAGCTTCCCAGAAGTCCTTGAGATGCGCCTTCAAGGGGCTACAG
TGGACGACACAGACACAGACCTGGAGTTTGAGATGATTGACGGAGCAGACCTCTCTCAGACAGAAGACAG
CCTGCAGGGGTCTTCCCGGAGCCTGAATGTCTCAGAAAGCAGTGTCCCCGTGAGGAGGAGGCCAGCCCGC
AAGATCCTAAGCCAGGTCACGGTGCTGGCGTTCCAAGGGGACGCGTTGCTGGAACAGATTGGTGTCATCG
GTGGGAACCTCACTGGGATCTTCATTCACCGTGTCACCCCCGGCTCTGCAGCAGATGAGATGGCCCTGCG
CCCTGGTACCCAGATCATGATGGTGGACTATAAACCTACCAAGCCATCATTAAGGGCCACTCTGGAGAAT
ACAACGCTGGAGCAGGCTGTGGGCCTTCTCAGGAGGGTGAATGGCTCCTGCTACTTGTCTGTGAAGATCA
ACACTGAAGGTTATAAGAACCTCATCCAGGACCTAGATGCCAAAGTGGTAACGTCTGGGGATTCCTTCTA
CATCCGTGTCAACCTGGCCATGCAGAGGGGAGGGGACGGAGAACTGCAAACTCACTGCAATGACATCCTG
CATGTCACTGACACCATGTTCCAAGGCCGCAGCTGCTGGCATGCCCACCATGTGAACCCCTACACCATGA
AAGACATGGAGCCTGGCACCATCCCCAACTATTCACAGGCTCAGCAGCAGCTTCTGGCCCTCATCCAGGA
CATGACTCAACGGTGCACAGTCCCCCGCAAGCCTCCTGGAGGACCACAGAAGTTAGTACGAATTGTCAGT
GTGGACAAAGCCGCTGTCAGTCCTCTGACTTCATCCTTTGACCAAAGCCAGTGGGATTCTGGCAAGGAGG
AAGGTGGTCCTAGCGTGTGCTTCTGGTCAGAGAGCTGCTTCACCCTGGCACCGTACACCCTGGTGCACCC
CCACAGGCCTGCCCGGCCCCGGCCTGTGCTGTTTGTGCCTAGATTAGTTGGAAGGATCCTGGGTAAAAAG
CTGTGTCTCCTCCAAGGTTTTAAGCAATGTTCAGCAGAGTACTTGAGCCAGGAGGAGTATGCCACCTGGA
GTCAGAGAGGGGACATCATCCAGGAGGGAGAGTCAATAGGTGACCACCACTGGATCACCCGGCATGCTGT
GGAGTCCCTCATGAATATGAGCACCCACGCCCTGCTGGATGTGCGGCTGGACAGCGTCCGAGTCCTACAT
AGGATGGACATGTTTCCCATTATCATCCATGTCTCTGTCAATGAGAAGACAGCAAAGAAACTCAGGAAGG
GCCTGCATCGGCTTGGCAGCTCGGAGGAGCAGTTCCTGGAGGTGGCCCGGCAGGAGGAGGGAGAGCTGGA
CAGAGTGCCGTGTCTGTACAGCAGCCTGGCCCCCGACAGCTGGAGTGATCTGGACAGCCTGCTCAGCTGT
GTGCGCCTGGCCATTGCAGATGAGCAGAAGAAGGTGGTGTGGACAGAGAGCCCCTGCTGA

Translation (999 aa):
MAELCRMDSTLTALDEEMLWDMLESHRCRIVQSICPSRLTPYLRQAKVLGQLDEEEILHSSRFTNSAMRV
GHLLDLLKARGKNGAIAFLESLKFHNPDVYTLVTGLQSDIDFSTFSGLMETSKLTECLAGAISSLQEELA
QEKAQKEVLLRRCQQLKERLGLAEAHAEGLRQLEVDHSRMKREVSTHFHEVLKLKDEMLNLSLHYSNALR
EKELAATRCHSLQEELYLVKQELQRASLVSSCERESRERSLKMASNLEPQGEELNRLKEENEKLRSMTFS
LVEKDILEQSLDEARESKQELVDRIHSLRERAVAAERQQKQYWEEKEQTLLQFRKTQVDCELYKEKMTML
QGQVAELQKERDQAYTARDRAQMEISQRLVEKDALRRRVFELTEQVCELRTQLRRLQAEAPGGPKQEAGA
RELCLRGKQRLVRMHAVCPPDDSDCSLLSSTESRLWWDLNSTSSREQMDSFRSSSPMPPSQQSLYKRVAE
DFLEDPESLSFPEVLEMRLQGATVDDTDTDLEFEMIDGADLSQTEDSLQGSSRSLNVSESSVPVRRRPAR
KILSQVTVLAFQGDALLEQIGVIGGNLTGIFIHRVTPGSAADEMALRPGTQIMMVDYKPTKPSLRATLEN
TTLEQAVGLLRRVNGSCYLSVKINTEGYKNLIQDLDAKVVTSGDSFYIRVNLAMQRGGDGELQTHCNDIL
HVTDTMFQGRSCWHAHHVNPYTMKDMEPGTIPNYSQAQQQLLALIQDMTQRCTVPRKPPGGPQKLVRIVS
VDKAAVSPLTSSFDQSQWDSGKEEGGPSVCFWSESCFTLAPYTLVHPHRPARPRPVLFVPRLVGRILGKK
LCLLQGFKQCSAEYLSQEEYATWSQRGDIIQEGESIGDHHWITRHAVESLMNMSTHALLDVRLDSVRVLH
RMDMFPIIIHVSVNEKTAKKLRKGLHRLGSSEEQFLEVARQEEGELDRVPCLYSSLAPDSWSDLDSLLSC
VRLAIADEQKKVVWTESPC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH