CCDS Report for Consensus CDS

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Report for CCDS25650.1 (current version)

CCDS	Status	Species	Chrom.	Gene	CCDS Release	NCBI Annotation Release	Ensembl Annotation Release	Links
25650.1	Public	Mus musculus	11	Recql5	23	108	98

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25650.1

Original	Current	Source	Nucleotide ID	Protein ID	Status in CCDS	Seq. Status	Links
		EBI	ENSMUST00000021097.9	ENSMUSP00000021097.3	Accepted	alive
		NCBI	NM_130454.2	NP_569721.1	Accepted	alive

RefSeq	Length	Related UniProtKB/SwissProt	Length	Identity	Gaps	Mismatches
NP_569721.1	982	Q8VID5	982	100%	0	0

Chromosomal Locations for CCDS 25650.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)

Genome Browser links:

Chromosome	Start	Stop
11	115893058	115893158
11	115893260	115893329
11	115893495	115893719
11	115893947	115894037
11	115894207	115894718
11	115894996	115895130
11	115895415	115895508
11	115895768	115895841
11	115895924	115895982
11	115896099	115896135
11	115896776	115896875
11	115897041	115897259
11	115916979	115917058
11	115923166	115923328
11	115925407	115925518
11	115927329	115927434
11	115927968	115928486
11	115930677	115930798
11	115932789	115932918

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.

Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2949 nt):
ATGAGCGCCCGTCCTTTCTCCACTCCCTTCGACCGGGAGCGGCGAGTCCGGAGCACCCTGAAGAAAGTCT TTGGGTTTGATTCTTTTAAAACACCTTTACAAGAGAGTGCGACCATGGCTGTAGTGAAAGGTGCCGAGGA TGTGTTTGTGTGCATGCCCACAGGGGCAGGGAAGTCTCTGTGCTATCAACTCCCTGCCCTGTTGGCCAGT GGGATCACCATTGTAGTCTCTCCTCTCATTGCCTTGATTCAGGACCAGGTAGACCATTTGCTGGCCTTGA AGGTACAAGTTAGTTCCCTGAACTCAAAGCTCTCGGTACAGGAGAGGAAGGAGCTGCTGTCTGACCTGGA GCGAGACAAACCTCGGACCAAACTTTTGTACATCACCCCAGAGATGGCAGCTTCAGCCTCCTTCCAGCCC ACCCTGAATTCCCTGGTGTCCCGAAACCTGCTCTCCTACTTGGTGGTGGATGAAGCTCATTGCGTTTCCC AGTGGGGACATGACTTCCGTCCTGACTATTTGCGTCTGGGTGCCCTACGTTCCCGCTTGGCACATGCCCC GTGCGTGGCTCTGACGGCTACAGCCACCCCACAGGTTCAAGAGGATGTGTTTGCTGCCCTGCACTTGAAG CAGCCAGTCGCCTCTTTCAAGACTCCCTGTTTCCGGGCCAACCTCTTCTATGATGTGCAGTTCAAGGAAC TGATTCCCGACGTCTATGGCAATCTGAGGGACTTCTGCCTTAAGGCTCTTGGACAGAAGGCTGAGAACGG GTCGTCCTCTGGCTGTGGCATTGTCTACTGCAGGACTAGAGAAGCTTGTGAACAACTGGCCATTGAGCTC AGCAGCAGGGGTGTGAACGCCAAGGCTTACCACGCAGGCCTGAAGGCATCTGATAGAACACAGGTACAGA ACGAGTGGATGGAGGAGAAGGTCCCTGTAATTGTTGCGACCATCAGTTTTGGGATGGGAGTAGACAAAGC TAATGTCCGGTTTGTTGCTCATTGGAATATTGCCAAGTCCATGGCTGGCTACTACCAGGAGTCTGGCCGT GCTGGCAGGGATGGCAAACCATCTTGGTGCCGCCTGTATTACTCTAGGAATGACCGAGACCAAGTCAGCT TCCTTATCAGGAAGGAACTAGCCAAACTCCAGGAAAAGAGGGGGAACAAACCGTCTGATAAGGCCACCCT GCTGGCCTTTGATGCCCTGGTGACCTTCTGTGAAGAAGTGGGGTGCCGCCATGCTGCCATTGCTAAGTAC TTTGGGGATGCACCCCCCGCCTGCGCCAAAGGCTGTGACTACTGCCAGAATCCTGCAGCCATAACGAAGA AGCTGGATGCCCTGGAGCGCAGCAGCAGCTGGAGCAAGACCTGCATCGGGCCCTCACAGGGGAATGGCTT CGATCCTGAGCTGTATGAGGGAGGCCGCAGGGGCTATGGTGGCTTCAGCAGGTATGATGAAGGTTCTGGA GGTAGCGGTGATGAGGGCAGAGATGAGGCCCACAAGCGGGAATGGAATCTTTTCTATCAGAAACAGATGA GCCTGCGCAAGGGCAAAGAGCCCAAGATAGAAGAATTCACGCCCCCAGATGAAGACTGTCCCCTGAGAGA GGCTTCAAGCAGGAAGATCCCGAAGCTCACAGTGAAGGCCCGTGAGCACTGCCTGCGACTTCTGGAGGAG GCTCTGATCAGTAACCATCAGGCTGCAGGCTCCACTCATGGAGCTGACCTGCAGGCCAAGGCTGTGGAAC TGGAGCATGAGACATTCCGGAATGCCAAGATGGTCAATCTGTACAAGGCCAGTGTCCTGAAGAAGGTGGC CGAGATCCACAAAGCCTCCAAGGATGGTCAGCTCTATGACATGGAAAGCGGCACCAAGAGCTGTGGGGCC GCAGCTGAGTTCTCGGAGCCCAGTGACTATGACATCCCGCCAACCTCACATGTGTACTCGCTCAAACCCA AGAGAGTAGGAGCTGGCTTCTCCAAAGGCCCCTGCTCATTCCAGACAGCCACAGAACTGTTGGGGAAGTC TCACTCCCAGAAGCAAGCCCCAGAGGCTATGCTAGAGGGTGGACAGGAGCCCCCAGGCTGGGTCTGTGAC CTTCAAGATGAAGACAGGAGCAAGCCCCACCCTGGGTACCAAGAAAAGGCTCTAGGAAGCAGTGTTAATT GTGGGGACCCCTCGCCTGAGAAGAAGACGAAAGGGTCTTCCCAGGGCAGTGCCAAAGCTAGAGCCAGCAA GAAACAACAGCTCCTAGCCACAGCAGCCCGCAAGGATTCCCAGAATATCACTCGATTCCTCTGTCAGAGG ACAGAATCTCCACCTCTCCCTGCTTCAGTTCCAAGATCAGAAGATGCCAGCCCCTCCTGTGGGGATGTCC CAGGGAAGTGCACACAAGAGGTTGGAGCTCAGGGACATTTGGTTGCTGTATTTCAGACTGAGGGTCCCAG GGAGAGGCCAAGCACCTGCTCACTCAGAGACCAGAGCTTCCCTGAAGGTCAGCCTAGCCCTCTAAAGGAA ACCCAGGCAGAGAAGCGGCCCAGACCACAGCAGGGCAACCCAGAGAGAAGGGCTCAAAAGAGGCTTCGCC CCTCAACCAAGTCCTCCATCTTGGCTGAGGCCAAGGACAGTACCTTGGCCAGTGATCGCAGCACTGAAAA CAAAGTGGCTCAAGAACCCTGCCAGCTCTCAGCATCTGGCACCTCCCTGAGGGAGGCCGCAGACATTGTG GTCAGGCACCTGACCCCCTTCTACAAGGAGGGCAGGTTTATATCCAAGGACCTGTTTAAGGGCTTTGCCC GCCACCTCTCACATTTGCTGGCTCAGCAGCTCTCTCCTGGAAGGAGTGTGAAGGAAGAGGCCCAGAGCCT CATCAAGCAGTTCTTCCACAATCGTGCCCGCTGTGAGAGTGAAGCTGACTGGCACAGCCTGCGTGGCCCA CAGCGATGA
Translation (982 aa):
MSARPFSTPFDRERRVRSTLKKVFGFDSFKTPLQESATMAVVKGAEDVFVCMPTGAGKSLCYQLPALLAS GITIVVSPLIALIQDQVDHLLALKVQVSSLNSKLSVQERKELLSDLERDKPRTKLLYITPEMAASASFQP TLNSLVSRNLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRLAHAPCVALTATATPQVQEDVFAALHLK QPVASFKTPCFRANLFYDVQFKELIPDVYGNLRDFCLKALGQKAENGSSSGCGIVYCRTREACEQLAIEL SSRGVNAKAYHAGLKASDRTQVQNEWMEEKVPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQESGR AGRDGKPSWCRLYYSRNDRDQVSFLIRKELAKLQEKRGNKPSDKATLLAFDALVTFCEEVGCRHAAIAKY FGDAPPACAKGCDYCQNPAAITKKLDALERSSSWSKTCIGPSQGNGFDPELYEGGRRGYGGFSRYDEGSG GSGDEGRDEAHKREWNLFYQKQMSLRKGKEPKIEEFTPPDEDCPLREASSRKIPKLTVKAREHCLRLLEE ALISNHQAAGSTHGADLQAKAVELEHETFRNAKMVNLYKASVLKKVAEIHKASKDGQLYDMESGTKSCGA AAEFSEPSDYDIPPTSHVYSLKPKRVGAGFSKGPCSFQTATELLGKSHSQKQAPEAMLEGGQEPPGWVCD LQDEDRSKPHPGYQEKALGSSVNCGDPSPEKKTKGSSQGSAKARASKKQQLLATAARKDSQNITRFLCQR TESPPLPASVPRSEDASPSCGDVPGKCTQEVGAQGHLVAVFQTEGPRERPSTCSLRDQSFPEGQPSPLKE TQAEKRPRPQQGNPERRAQKRLRPSTKSSILAEAKDSTLASDRSTENKVAQEPCQLSASGTSLREAADIV VRHLTPFYKEGRFISKDLFKGFARHLSHLLAQQLSPGRSVKEEAQSLIKQFFHNRARCESEADWHSLRGP QR

	Links Key
	Links to:	History report BLAST report Entrez Gene Nucleotide report Protein report
	Re-query CCDS DB by:	CCDS ID Gene ID Nucleotide ID Protein ID
	Genome Browser Links:	Ensembl Genome Browser NCBI Sequence Viewer UCSC Genome Browser VEGA Genome Browser

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