NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS22106.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22106.1 Public Mus musculus 8 Lamp1 23 108 98 CCDS HistoryNCBI Gene:16783Re-query CCDS DB by CCDS ID:22106.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22106.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033824.7 ENSMUSP00000033824.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033824.7Link to Ensembl Protein Viewer:ENSMUSP00000033824.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000033824Re-query CCDS DB by Protein ID:ENSMUSP00000033824
Original member Current member NCBI NM_010684.3 NP_034814.2 Accepted alive Link to Nucleotide Sequence:NM_010684.3Link to Protein Sequence:NP_034814.2Re-query CCDS DB by Nucleotide ID:NM_010684Re-query CCDS DB by Protein ID:NP_034814Link to BLAST:NP_034814.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034814.2 406 P11438 406 100% 0 0

Chromosomal Locations for CCDS 22106.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 13159389 13159434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13165849 13165967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13167158 13167377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13167807 13167965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13171205 13171383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13172541 13172660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13173627 13173693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13173780 13173950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13174419 13174558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1221 nt):
ATGGCGGCCCCCGGCGCCCGGCGGCCGCTGCTCCTGCTGCTGCTGGCAGGCCTTGCACATGGCGCCTCAG
CACTCTTTGAGGTGAAAAACAATGGCACAACGTGTATAATGGCCAGCTTCTCTGCCTCCTTTCTGACCAC
CTACGAGACTGCGAATGGTTCTCAGATCGTGAACATTTCCCTGCCAGCCTCTGCAGAAGTACTGAAAAAT
GGCAGTTCTTGTGGTAAAGAAAATGTTTCTGACCCCAGCCTCACAATTACTTTTGGAAGAGGATATTTAC
TGACACTCAACTTCACAAAAAATACAACACGTTACAGTGTCCAGCATATGTATTTTACATATAACTTGTC
AGATACAGAACATTTTCCCAATGCCATCAGCAAAGAGATCTACACCATGGATTCCACAACTGACATCAAG
GCAGACATCAACAAAGCATACCGGTGTGTCAGTGATATCCGGGTCTACATGAAGAATGTGACCGTTGTGC
TCCGGGATGCCACTATCCAGGCCTACCTGTCGAGTGGCAACTTCAGCAAGGAAGAGACACACTGCACACA
GGATGGACCTTCCCCAACCACTGGGCCACCCAGCCCCTCACCACCACTTGTGCCCACAAACCCCACTGTA
TCCAAGTACAATGTTACTGGTAACAACGGAACCTGCCTGCTGGCCTCTATGGCACTGCAACTGAATATCA
CCTACCTGAAAAAGGACAACAAGACGGTGACCAGAGCGTTCAACATCAGCCCAAATGACACATCTAGTGG
GAGTTGCGGTATCAACTTGGTGACCCTGAAAGTGGAGAACAAGAACAGAGCCCTGGAATTGCAGTTTGGG
ATGAATGCCAGCTCTAGCCTGTTTTTCCTGCAAGGAGTGCGCTTGAATATGACTCTTCCTGATGCCCTAG
TGCCCACATTCAGCATCTCCAACCATTCACTGAAAGCTCTTCAGGCCACTGTGGGAAACTCATACAAGTG
CAACACTGAGGAACACATCTTTGTCAGCAAGATGCTCTCCCTCAATGTCTTCAGTGTGCAGGTCCAGGCT
TTCAAGGTGGACAGTGACAGGTTTGGGTCTGTGGAAGAGTGTGTTCAGGATGGTAACAACATGTTGATCC
CCATTGCTGTGGGCGGTGCCCTGGCAGGGCTGGTCCTCATCGTCCTCATTGCCTACCTCATTGGCAGGAA
GAGGAGTCACGCCGGCTATCAGACCATCTAG

Translation (406 aa):
MAAPGARRPLLLLLLAGLAHGASALFEVKNNGTTCIMASFSASFLTTYETANGSQIVNISLPASAEVLKN
GSSCGKENVSDPSLTITFGRGYLLTLNFTKNTTRYSVQHMYFTYNLSDTEHFPNAISKEIYTMDSTTDIK
ADINKAYRCVSDIRVYMKNVTVVLRDATIQAYLSSGNFSKEETHCTQDGPSPTTGPPSPSPPLVPTNPTV
SKYNVTGNNGTCLLASMALQLNITYLKKDNKTVTRAFNISPNDTSSGSCGINLVTLKVENKNRALELQFG
MNASSSLFFLQGVRLNMTLPDALVPTFSISNHSLKALQATVGNSYKCNTEEHIFVSKMLSLNVFSVQVQA
FKVDSDRFGSVEECVQDGNNMLIPIAVGGALAGLVLIVLIAYLIGRKRSHAGYQTI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH