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Report for CCDS56805.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56805.1 Public Mus musculus 11 Krt32 23 108 98 CCDS HistoryNCBI Gene:16670Re-query CCDS DB by CCDS ID:56805.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56805.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000107419.1 ENSMUSP00000103042.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107419.1Link to Ensembl Protein Viewer:ENSMUSP00000103042.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107419Re-query CCDS DB by Protein ID:ENSMUSP00000103042
Original member Current member NCBI NM_001159374.3 NP_001152846.2 Accepted alive Link to Nucleotide Sequence:NM_001159374.3Link to Protein Sequence:NP_001152846.2Re-query CCDS DB by Nucleotide ID:NM_001159374Re-query CCDS DB by Protein ID:NP_001152846Link to BLAST:NP_001152846.2

Chromosomal Locations for CCDS 56805.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 100081159 100081288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100083888 100084108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100084717 100084842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100084925 100085086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100086350 100086506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100086673 100086755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100087744 100088226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1362 nt):
ATGCCATCCAGCTGCTGTGTCACCAACACCTCATCAGCATCTCTCAAGAGCTCGGCACGGCCTTCCTCCG
TCTGTTCCAGTAACATGGGCAGCAGGTCCGAGCTGTGCCTGGGTTATGTCTGCCAGCCGCTGCAGTGCAT
GCCCTCTGTCTGCATGCCGACCACCTACAGGCCAGCCAGCTGCCTTTCTAAGACCTACTTGTCCAGCTCT
TGCCAACCCAGCAACCGCCGGCCAACGGGTTGCATCTCTAGCTCCATGGGGACCTATGGCCTGTTCTGTG
AGGGTGCCTTCAATGGCAATGAGAAAGAGACCATGCAGGTCCTGAATGACCGTCTGGCCAACTACCTGGA
GAAGGTGAGGCAGCTGGAGAAAGAGAATGCAGAGCTGGAGGGCAAGATCCAAGATGTCTACCAGGGGCAG
GTGCTGACCATGTGTCCTGACTACCAGTCCTACTTCCAGACCATCGAAGAGCTGCAGCAAAAGGTTCTGT
GCACCAAGGCTGAGAATGCAAGAATGATCGTGCACATCGACAATGCCAAGCTGGCTGCAGATGACTTCAG
AACCAAGTATGAAACAGAGCTGGCCCTAAGACAGCTGGTAGAAGCAGACACCAATGGCCTGCGCAGGATC
CTGGATGAGCTAACCCTTAATAAGGCTGATCTAGAGGCTCAAGTAGAGTCCCTGAAGGAGGAACTTCTGT
GCCTCAAGAGGAACCATGAAGAGGAAGTTGGTGTCCTTCGACAACAGCTCGGGGACCGCCTTAACATTGA
GGTAGATGCTGCACCTCCCGTGGACCTAACCAGGATGCTGGAGGAGATGAGATGTCAGTATGAGACCATG
GTGGAAACCAACCACAGGGACGTGGAGGAATGGTTCAATATGCAGATGGAGGAGCTTAACAAGCAGGTGG
CCACAAGCTCTGAGCAGCTTCAGAGCTACCAATCAGACATCATTGACCTGAGACGAACAGTCAATACTCT
GGAGATAGAACTGCAGGCTCAGCACAGCCTGAGAGACTCCCTGGAAAACACGCTGGGGGAGACAGAGGGC
CGCTTCACCTCCCAGCTGTCCCAGATGCAATGCATGATCACCAATGTGGAGTCCCAGCTGTCTGACATCC
GCTGTGACCTGGAGAGACAGAACCAAGAGTACAAGGTGTTGCTGGATGTCAAGGCCCGGCTGGAGTGTGA
GATTGACACGTACAGGGGCCTGCTGGAGAGTGAGGACAGCAAGCTACCCTGTAACCCTTGCTCCACTCCC
TCCTGCCAGCCTTGTGCACCCTCTCCTGGGGTATCCCGCACCGTCTGTGTGCCCCACACTGTTTGTGTGC
CTTGTTCACCCTGCCTACAGACCCGCTACTGA

Translation (453 aa):
MPSSCCVTNTSSASLKSSARPSSVCSSNMGSRSELCLGYVCQPLQCMPSVCMPTTYRPASCLSKTYLSSS
CQPSNRRPTGCISSSMGTYGLFCEGAFNGNEKETMQVLNDRLANYLEKVRQLEKENAELEGKIQDVYQGQ
VLTMCPDYQSYFQTIEELQQKVLCTKAENARMIVHIDNAKLAADDFRTKYETELALRQLVEADTNGLRRI
LDELTLNKADLEAQVESLKEELLCLKRNHEEEVGVLRQQLGDRLNIEVDAAPPVDLTRMLEEMRCQYETM
VETNHRDVEEWFNMQMEELNKQVATSSEQLQSYQSDIIDLRRTVNTLEIELQAQHSLRDSLENTLGETEG
RFTSQLSQMQCMITNVESQLSDIRCDLERQNQEYKVLLDVKARLECEIDTYRGLLESEDSKLPCNPCSTP
SCQPCAPSPGVSRTVCVPHTVCVPCSPCLQTRY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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