NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS26148.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26148.1 Public Mus musculus 12 Serpina3c 23 108 98 CCDS HistoryNCBI Gene:16625Re-query CCDS DB by CCDS ID:26148.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 26148.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000085050.3 ENSMUSP00000082125.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000085050.3Link to Ensembl Protein Viewer:ENSMUSP00000082125.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000085050Re-query CCDS DB by Protein ID:ENSMUSP00000082125
Original member Current member NCBI NM_008458.2 NP_032484.1 Accepted alive Link to Nucleotide Sequence:NM_008458.2Link to Protein Sequence:NP_032484.1Re-query CCDS DB by Nucleotide ID:NM_008458Re-query CCDS DB by Protein ID:NP_032484Link to BLAST:NP_032484.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032484.1 417 P29621 417 100% 0 0

Chromosomal Locations for CCDS 26148.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 104147232 104147423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 104148314 104148464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 104149373 104149646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 104151441 104152077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1254 nt):
ATGGCCTTCATTGTAGCTCTGGGGCTCGTGATAACTGGGATCTGCCCTGGTGTCCTCTGCTTCCCAGATG
GCACATTAGAAAGAGACACTTTATTCCATAAAGACAAAGAAAATGGGACACAACTCGACAGTCTCACATT
GGCCTCCATCAACACTGACTTTGCCTTCAGCCTCTACAAGAAGCTGGCTTTGAAGAATCCAGATACAAAT
ATTGTCTTCTCCCCACTTAGCATCTCAGCTGCCTTGGCCATCGTGTCCCTGGGAGCAAAGGGCAACACCC
TGGAAGAGATACTAGAAGGTCTCAACTTCAATCTCACAGAGACCCCTGAAGCAGACATCCACCAGGGCTT
TGGACATCTCCTACAGAGGCTCAGCCATCCAGGGGAGCAGGTACAGATCAGCACAGGCAGTGCCCTGTTT
GTTGAAAAGCACCTGCAGATTCTGGCAGAATTCCAGGAGAAGGCAAGGGCTCTGTACCAGGCTGAGGCCT
TCACAGCAGACTTCCAGCAGCCTCTCGAGGCCACAAAGCTCATCAATGACTATGTGAGCAATCAGACCCA
GAGGAAGATCAAGGGACTCATCTCAGACCTGGATACGGATACACTGATGGTGCTGGTGAATTACATCTAC
TTTAAAGGCAAATGGAAGATGCCCTTTAATCCCCGTGACACATTTGAGTCAGAGTTCTACTTGGATGTGA
AGAGGTCTGTGAAGGTGCCCATGATGAAAATTAAGACCCTGACCACACCCTACTTCCGGGATGAGGAGCT
GTCCTGCACTGTGGTGGAACTGAAGTACAAAGGAAATGCCAGCGCCCTGTTCATTCTCCCTGACCAGGGC
AGGATGCAGCAGGTAGAAGCCAGCTTGCAACCAGAGACCCTGAGGAAGTGGAAGAACTCTCTGAGGCCCA
GGAAAATGGGTGAGCTCTACCTGCCCAAGTTCTCCATCTCTACTGACTACAGCCTGAAGAACATCCTTCC
AGAGCTGGGCATTAAAGAAATCTTCTCCAAACAAGCTGACCTATCTGGGATCACAGGAACCAAGGACCTG
ATAGTGTCTCAGATGGTCCACAAGGCTGTGCTGGACGTGGCTGAGACAGGCACAGAAGGAGTTGCTGCCA
CAGGGGTCAATTTTCGCATTCTTAGTAGAAGAACCAGTCTGTGGTTCAACAGGACATTCCTGATGGTCAT
CTCTCACACAGATGTTCAGACTACTCTCTTTATAGCCAAAATCACTCACCCTAAGAGAGCCTAA

Translation (417 aa):
MAFIVALGLVITGICPGVLCFPDGTLERDTLFHKDKENGTQLDSLTLASINTDFAFSLYKKLALKNPDTN
IVFSPLSISAALAIVSLGAKGNTLEEILEGLNFNLTETPEADIHQGFGHLLQRLSHPGEQVQISTGSALF
VEKHLQILAEFQEKARALYQAEAFTADFQQPLEATKLINDYVSNQTQRKIKGLISDLDTDTLMVLVNYIY
FKGKWKMPFNPRDTFESEFYLDVKRSVKVPMMKIKTLTTPYFRDEELSCTVVELKYKGNASALFILPDQG
RMQQVEASLQPETLRKWKNSLRPRKMGELYLPKFSISTDYSLKNILPELGIKEIFSKQADLSGITGTKDL
IVSQMVHKAVLDVAETGTEGVAATGVNFRILSRRTSLWFNRTFLMVISHTDVQTTLFIAKITHPKRA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH