NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS27817.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27817.1 Public Mus musculus 15 Kcnh3 23 108 98 CCDS HistoryNCBI Gene:16512Re-query CCDS DB by CCDS ID:27817.1See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27817.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000041415.4 ENSMUSP00000040548.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000041415.4Link to Ensembl Protein Viewer:ENSMUSP00000040548.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000041415Re-query CCDS DB by Protein ID:ENSMUSP00000040548
Original member Current member NCBI NM_010601.4 NP_034731.3 Accepted alive Link to Nucleotide Sequence:NM_010601.4Link to Protein Sequence:NP_034731.3Re-query CCDS DB by Nucleotide ID:NM_010601Re-query CCDS DB by Protein ID:NP_034731Link to BLAST:NP_034731.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034731.3 1095 Q9WVJ0 1095 100% 0 0

Chromosomal Locations for CCDS 27817.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 99224976 99225051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99226308 99226541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99226981 99227115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99227909 99228042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99228473 99228716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99229059 99229216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99229306 99229513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99232693 99233004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99233249 99233448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99233867 99234116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99238075 99238292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99239595 99239926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99240887 99240993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99241750 99241826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99241920 99242522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3288 nt):
ATGCCGGCCATGCGGGGGCTCCTGGCGCCGCAGAACACCTTCCTGGACACCATCGCCACCCGCTTCGACG
GGACGCACAGCAACTTCGTGCTGGGCAACGCCCAGGTGGCGGGGCTCTTCCCTGTGGTCTACTGCTCCGA
TGGCTTCTGTGACCTCACGGGTTTCTCCAGAGCTGAGGTCATGCAGCGGGGCTGTGCCTGCTCCTTCCTC
TATGGGCCAGACACCAGTGAGCTGGTCCGCCAACAGATCCGAAAGGCCCTAGATGAGCACAAAGAATTCA
AGGCTGAACTGATCCTGTACCGGAAGAGTGGGCTTCCATTCTGGTGTCTCCTGGATGTGATACCTATAAA
AAATGAGAAGGGGGAGGTGGCCCTCTTCCTGGTCTCTCACAAGGACATCAGCGAGACCAAGAACCGAGGA
GGCCCTGACAACTGGAAGGAGAGAGGCGGTGGCCGGCGCCGATATGGTCGGGCCGGATCCAAAGGCTTCA
ATGCCAATCGGAGGCGGAGCCGGGCAGTTCTCTACCACCTCTCTGGCCATCTGCAGAAGCAACCCAAGGG
CAAGCACAAGCTCAATAAGGGAGTGTTTGGAGAGAAGCCAAATTTGCCTGAATATAAAGTCGCTGCTATC
CGGAAGTCACCCTTTATCCTGCTGCACTGTGGGGCTCTGAGAGCCACCTGGGATGGCTTCATCCTGCTTG
CCACACTCTACGTGGCAGTCACTGTGCCATACAGTGTGTGTGTGAGCACAGCACGGGAACCCAGTGCTGC
CCGTGGCCCACCTAGTGTCTGTGACCTGGCTGTGGAGGTCCTCTTCATCTTAGATATTGTGCTGAATTTT
CGTACTACATTTGTGTCCAAGTCAGGCCAGGTGGTATTTGCCCCAAAGTCCATTTGCCTCCACTACGTCA
CCACCTGGTTCCTGCTGGATGTCATAGCAGCACTGCCCTTTGACCTACTACATGCCTTCAAGGTCAACGT
GTACGTTGGGGCTCACCTCCTGAAGACCGTGCGACTGCTGCGCCTGCTGCGCCTGCTGCCAAGACTGGAC
CGGTACTCACAGTACAGCGCGGTTGTGCTCACCTTGCTCATGGCTGTCTTCGCCCTGCTCGCTCACTGGG
TGGCCTGCGTCTGGTTTTACATCGGCCAGCAAGAGATTGAGAGCAGCGAGTCGGAGCTGCCTGAGATCGG
CTGGCTGCAGGAGCTGGCACGCAGGCTGGAGACCCCCTACTACCTGGTGAGCCGGAGTCCAGATGGAGGG
AACAGCTCTGGCCAGAGTGAAAACTGCAGCAGCAGCAGCAGCAGCAGTGGCAGCGGTGGCGGCAGAGGCA
GCGAAGCCAATGGGACCGGGCTGGAGCTGCTGGGTGGCCCGTCCCTACGCAGCGCCTACATCACCTCCCT
GTACTTCGCGCTCAGCAGTCTCACCAGTGTGGGCTTCGGCAACGTGTCCGCTAACACAGACACGGAGAAG
ATCTTCTCCATCTGCACCATGCTTATCGGAGCTCTAATGCATGCAGTGGTGTTTGGGAATGTGACGGCCA
TCATCCAGCGCATGTATGCTCGCCGCTTTCTGTACCACAGCCGCACTCGTGACCTGCGAGACTACATCCG
CATCCACCGCATCCCCAAACCCCTCAAACAACGAATGCTGGAGTACTTCCAAGCCACCTGGGCTGTGAAC
AATGGCATCGATACCACTGAGCTGCTGCAGAGCCTCCCGGATGAGCTTCGTGCAGACATCGCCATGCACC
TGCACAAGGAAGTCCTGCAGCTGCCGCTGTTCGAGGCCGCCAGCCGTGGCTGCCTGCGGGCGCTGTCCCT
GGCCCTGAGGCCGGCCTTCTGCACGCCGGGCGAGTACCTCATTCACCAAGGCGATGCTCTCCAGGCCCTC
TATTTTGTCTGCTCGGGTTCCATGGAGGTCCTCAAAGGTGGCACCGTGCTCGCCATTCTAGGGAAGGGTG
ACCTGATCGGCTGCGAGCTGCCCCAGCGGGAACAAGTAGTGAAGGCCAATGCAGACGTGAAGGGGCTGAC
ATACTGCGTCCTACAGTGTCTGCAGTTGGCTGGGCTGCATGAGAGCCTTGCTCTGTACCCTGAGTTTGCC
CCACGCTTTAGCCGTGGCCTCCGAGGGGAGCTCAGCTACAACCTGGGAGCTGGTGGAGTCTCTGCGGAGG
TGGATACCAGCTCCCTGAGTGGTGACAACACCCTCATGTCCACACTGGAGGAGAAGGAGACAGATGGGGA
GCAGGGACACACGGTCTCACCAGCCCCAGCAGATGAGCCCTCCAGTCCCCTGCTGTCGCCCGGCTGTACC
TCCTCCTCCTCAGCCGCCAAACTACTCTCCCCACGTCGAACTGCGCCTCGGCCGAGGTTGGGTGGCAGAG
GGCGGCCAAGTAGGGCAGGGGTTTTGAAGCCTGAGGCTGGTCCTTCTGCTCATCCACGGTCACTTGATGG
GCTGCAGCTACCCCCCATGCCATGGAATGTACCCCCAGACCTGAGCCCCAGGGTCGTAGATGGCATTGAA
GATGGCTGCAGCTCTGACCAGCCCAAGTTCTCTTTCCGAGTGGGTCAGTCTGGCCCAGAATGTAGCAGCA
GCCCCTCCCCAGGAACAGAGAGCGGCCTGCTTACAGTCCCCTTGGGGCCCAGTGAAGCAAGAAACACAGA
CACGCTGGACAAGCTACGGCAGGCGGTGATGGAGCTGTCTGAACAGGTGCTGCAGATGCGGGAGGGACTG
CAGTCACTTCGCCAGGCTGTGCAGCTCATCCTGGTGCCCCAAGGGGAAGGCCAGTGTCCCCGGGGATCAG
GAGAGGAGCCGTGCCCAGCCACCGCCTCTGGGCTCCTACAACCCCTGCGTGTGGACACTGGGGCATCGTC
CTACTGCCTGCAGCCCCCAGCAGGTTCGGTTTTGAGTGGGACCTGGCCTCACCCCCGTCCAGGGCAACCC
CCTCCCCTCATGGCGCCCTGGCCCTGGGGCCCCCCAGCATCTCAGAGCTCCCCTTGGCCTCGAGCCACAG
CTTTATGGACCTCCACTTCAGACTCGGAGCCCCCTGGCTCTGGAGATCTCTGCTCTGAGCCCAGCACACC
AGCCTCACCCCCTCCTTCTGAGGAAGGGGCTAGGACTGGGACCCCAGCACCTGTGAGCCAGGCTGAGGCT
ACCAGTACTGGAGAGCCCCCTCCGGGGCCAGGAGGCCGAGCCTTGCCCTGGGATCCCCACAGCCTAGAGA
TGGTGCTCATTGGCTGCCACGGTCCTGGCACGGTCCAGTGGACCCAGGAAGAAGGCACAGGGGTCTGA

Translation (1095 aa):
MPAMRGLLAPQNTFLDTIATRFDGTHSNFVLGNAQVAGLFPVVYCSDGFCDLTGFSRAEVMQRGCACSFL
YGPDTSELVRQQIRKALDEHKEFKAELILYRKSGLPFWCLLDVIPIKNEKGEVALFLVSHKDISETKNRG
GPDNWKERGGGRRRYGRAGSKGFNANRRRSRAVLYHLSGHLQKQPKGKHKLNKGVFGEKPNLPEYKVAAI
RKSPFILLHCGALRATWDGFILLATLYVAVTVPYSVCVSTAREPSAARGPPSVCDLAVEVLFILDIVLNF
RTTFVSKSGQVVFAPKSICLHYVTTWFLLDVIAALPFDLLHAFKVNVYVGAHLLKTVRLLRLLRLLPRLD
RYSQYSAVVLTLLMAVFALLAHWVACVWFYIGQQEIESSESELPEIGWLQELARRLETPYYLVSRSPDGG
NSSGQSENCSSSSSSSGSGGGRGSEANGTGLELLGGPSLRSAYITSLYFALSSLTSVGFGNVSANTDTEK
IFSICTMLIGALMHAVVFGNVTAIIQRMYARRFLYHSRTRDLRDYIRIHRIPKPLKQRMLEYFQATWAVN
NGIDTTELLQSLPDELRADIAMHLHKEVLQLPLFEAASRGCLRALSLALRPAFCTPGEYLIHQGDALQAL
YFVCSGSMEVLKGGTVLAILGKGDLIGCELPQREQVVKANADVKGLTYCVLQCLQLAGLHESLALYPEFA
PRFSRGLRGELSYNLGAGGVSAEVDTSSLSGDNTLMSTLEEKETDGEQGHTVSPAPADEPSSPLLSPGCT
SSSSAAKLLSPRRTAPRPRLGGRGRPSRAGVLKPEAGPSAHPRSLDGLQLPPMPWNVPPDLSPRVVDGIE
DGCSSDQPKFSFRVGQSGPECSSSPSPGTESGLLTVPLGPSEARNTDTLDKLRQAVMELSEQVLQMREGL
QSLRQAVQLILVPQGEGQCPRGSGEEPCPATASGLLQPLRVDTGASSYCLQPPAGSVLSGTWPHPRPGQP
PPLMAPWPWGPPASQSSPWPRATALWTSTSDSEPPGSGDLCSEPSTPASPPPSEEGARTGTPAPVSQAEA
TSTGEPPPGPGGRALPWDPHSLEMVLIGCHGPGTVQWTQEEGTGV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH