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Report for CCDS16748.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16748.1 Public Mus musculus 2 Itpa 23 108 98 CCDS HistoryNCBI Gene:16434Re-query CCDS DB by CCDS ID:16748.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16748.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000103193.4 ENSMUSP00000099482.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000103193.4Link to Ensembl Protein Viewer:ENSMUSP00000099482.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000103193Re-query CCDS DB by Protein ID:ENSMUSP00000099482
Original member Current member NCBI NM_025922.3 NP_080198.2 Accepted alive Link to Nucleotide Sequence:NM_025922.3Link to Protein Sequence:NP_080198.2Re-query CCDS DB by Nucleotide ID:NM_025922Re-query CCDS DB by Protein ID:NP_080198Link to BLAST:NP_080198.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080198.2 198 Q9D892 198 100% 0 0

Chromosomal Locations for CCDS 16748.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 130667870 130667935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130671401 130671458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130671556 130671620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130672060 130672133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130674239 130674270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130675629 130675744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130679335 130679411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130680973 130681081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (597 nt):
ATGGCTGCGTCTTTGGTCGGGAAGAAGATCGTGTTTGTGACGGGAAACGCCAAGAAGCTGGAGGAGGTCA
TTCAGATTCTCGGAGATAATTTTCCATGCACTTTGGAGGCTCAGAAAATTGACCTGCCTGAGTACCAGGG
AGAACCGGATGAGATTTCCATACAGAAGTGTCGGGAGGCAGCTCGACAGGTGCAGGGCCCTGTCCTGGTG
GAAGATACCTGTCTGTGCTTTAACGCACTTGGGGGACTGCCTGGCCCCTACATAAAATGGTTCCTACAGA
AGCTGAAGCCTGAAGGTCTCCACCAGCTCCTGGCCGGCTTTGAAGACAAATCGGCCTATGCACTCTGCAC
ATTCGCTCTCAGCACTGGGGACCCAAGCCAGCCAGTGCTTCTCTTCAGAGGCCAGACCTCGGGACAGATT
GTGATGCCACGAGGCAGCCGGGACTTTGGCTGGGATCCCTGCTTTCAGCCTGATGGATATGAGCAAACGT
ATGCAGAGATGCCAAAGTCTGAGAAGAACACCATTTCTCATCGGTTCCGGGCCCTGCACAAGCTACAGGA
GTACTTTAGTGTGGCTGCTGGGGCTGGTGACCACTAG

Translation (198 aa):
MAASLVGKKIVFVTGNAKKLEEVIQILGDNFPCTLEAQKIDLPEYQGEPDEISIQKCREAARQVQGPVLV
EDTCLCFNALGGLPGPYIKWFLQKLKPEGLHQLLAGFEDKSAYALCTFALSTGDPSQPVLLFRGQTSGQI
VMPRGSRDFGWDPCFQPDGYEQTYAEMPKSEKNTISHRFRALHKLQEYFSVAAGAGDH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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