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Report for CCDS30349.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30349.1 Public Mus musculus X Itm2a 23 108 98 CCDS HistoryNCBI Gene:16431Re-query CCDS DB by CCDS ID:30349.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30349.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033591.5 ENSMUSP00000033591.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033591.5Link to Ensembl Protein Viewer:ENSMUSP00000033591.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000033591Re-query CCDS DB by Protein ID:ENSMUSP00000033591
Original member Current member NCBI NM_008409.2 NP_032435.2 Accepted alive Link to Nucleotide Sequence:NM_008409.2Link to Protein Sequence:NP_032435.2Re-query CCDS DB by Nucleotide ID:NM_008409Re-query CCDS DB by Protein ID:NP_032435Link to BLAST:NP_032435.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032435.2 263 Q61500 263 100% 0 0

Chromosomal Locations for CCDS 30349.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 107397891 107397979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 107398096 107398246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 107398771 107398881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 107399096 107399293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 107399567 107399698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 107403106 107403216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (792 nt):
ATGGTGAAGATCGCCTTCAACACCCCTACGGCGGTGCAAAAGGAGGAGGCGCGGCAAGATGTAGAGGCGC
TCGTCAGTCGCACTGTCCGAGCTCAAATCCTGACTGGCAAGGAGCTCAGAGTTGTCCCGCAGGAGAAAGA
TGGCTCATCTGGGAGATGCATGCTTACTCTCCTAGGCCTCTCATTCATCTTGGCAGGACTGATTGTTGGT
GGAGCCTGCATTTACAAGTACTTCATGCCCAAGAGCACCATTTACCATGGTGAGATGTGCTTCTTTGATT
CTGAGGATCCTGTCAATTCCATTCCTGGAGGAGAGCCATACTTTCTGCCTGTGACTGAGGAGGCTGATAT
CCGTGAGGATGACAACATTGCCATCATTGATGTGCCTGTGCCCAGTTTCTCTGATAGCGATCCGGCGGCA
ATTATTCACGACTTTGAGAAGGGAATGACTGCTTACCTGGACTTGCTTTTGGGAAACTGTTATCTGATGC
CCCTCAATACTTCCATTGTTATGACTCCAAAGAATCTGGTGGAACTTTTTGGAAAACTGGCAAGTGGCAA
GTATTTGCCTCATACTTATGTGGTTCGTGAAGACCTGGTTGCTGTGGAAGAAATTCGTGATGTTAGTAAC
CTTGGTATTTTTATTTACCAACTTTGCAACAACCGAAAATCCTTCCGCCTTAGACGCAGAGACCTTCTGC
TGGGTTTCAACAAGCGTGCCATTGACAAATGCTGGAAGATTAGACACTTCCCCAATGAATTTATCGTTGA
AACCAAGATCTGTCAGGAGTGA

Translation (263 aa):
MVKIAFNTPTAVQKEEARQDVEALVSRTVRAQILTGKELRVVPQEKDGSSGRCMLTLLGLSFILAGLIVG
GACIYKYFMPKSTIYHGEMCFFDSEDPVNSIPGGEPYFLPVTEEADIREDDNIAIIDVPVPSFSDSDPAA
IIHDFEKGMTAYLDLLLGNCYLMPLNTSIVMTPKNLVELFGKLASGKYLPHTYVVREDLVAVEEIRDVSN
LGIFIYQLCNNRKSFRLRRRDLLLGFNKRAIDKCWKIRHFPNEFIVETKICQE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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