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Report for CCDS21522.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21522.1 Public Mus musculus 7 Il18bp 23 108 98 CCDS HistoryNCBI Gene:16068Re-query CCDS DB by CCDS ID:21522.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21522.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000094134.4 ENSMUSP00000091685.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000094134.4Link to Ensembl Protein Viewer:ENSMUSP00000091685.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000094134Re-query CCDS DB by Protein ID:ENSMUSP00000091685
Original member Current member EBI ENSMUST00000209844.1 ENSMUSP00000148080.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000209844.1Link to Ensembl Protein Viewer:ENSMUSP00000148080.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000209844Re-query CCDS DB by Protein ID:ENSMUSP00000148080
Original member Current member NCBI NM_001363982.1 NP_001350911.1 Accepted alive Link to Nucleotide Sequence:NM_001363982.1Link to Protein Sequence:NP_001350911.1Re-query CCDS DB by Nucleotide ID:NM_001363982Re-query CCDS DB by Protein ID:NP_001350911Link to BLAST:NP_001350911.1
Original member Current member NCBI NM_010531.2 NP_034661.1 Accepted alive Link to Nucleotide Sequence:NM_010531.2Link to Protein Sequence:NP_034661.1Re-query CCDS DB by Nucleotide ID:NM_010531Re-query CCDS DB by Protein ID:NP_034661Link to BLAST:NP_034661.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001350911.1 193 Q9Z0M9 193 100% 0 0
NP_034661.1 193 Q9Z0M9 193 100% 0 0

Chromosomal Locations for CCDS 21522.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 102015746 102015835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 102016043 102016190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 102016278 102016401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 102016750 102016941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 102017287 102017314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (582 nt):
ATGACCATGAGACACTGCTGGACAGCAGGCCCCAGTTCTTGGTGGGTCCTGCTTTTGTATGTCCATGTCA
TTTTGGCCAGAGCCACATCTGCACCTCAGACAACTGCCACTGTCTTAACTGGAAGCTCAAAAGACCCATG
CTCTTCCTGGTCTCCAGCAGTCCCAACTAAGCAGTACCCAGCACTGGATGTGATTTGGCCAGAAAAAGAA
GTGCCACTGAATGGAACTCTGACCTTGTCCTGTACTGCCTGCAGCCGCTTCCCCTACTTCAGCATCCTCT
ACTGGCTGGGCAATGGTTCCTTCATTGAGCACCTCCCAGGCCGGCTGAAGGAGGGCCACACAAGTCGCGA
GCACAGGAACACAAGCACCTGGCTGCACAGGGCCTTGGTGCTGGAAGAACTGAGCCCCACCCTACGAAGT
ACCAACTTCTCCTGTTTGTTTGTGGATCCTGGACAAGTGGCCCAGTATCACATCATTCTGGCCCAGCTCT
GGGATGGGTTGAAGACAGCTCCGTCCCCTTCTCAAGAAACCCTCTCTAGCCACAGCCCAGTATCCAGATC
AGCAGGCCCAGGGGTTGCATAA

Translation (193 aa):
MTMRHCWTAGPSSWWVLLLYVHVILARATSAPQTTATVLTGSSKDPCSSWSPAVPTKQYPALDVIWPEKE
VPLNGTLTLSCTACSRFPYFSILYWLGNGSFIEHLPGRLKEGHTSREHRNTSTWLHRALVLEELSPTLRS
TNFSCLFVDPGQVAQYHIILAQLWDGLKTAPSPSQETLSSHSPVSRSAGPGVA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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