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Report for CCDS25893.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25893.1 Public Mus musculus 12 Ifrd1 23 108 98 CCDS HistoryNCBI Gene:15982Re-query CCDS DB by CCDS ID:25893.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25893.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000001672.11 ENSMUSP00000001672.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000001672.11Link to Ensembl Protein Viewer:ENSMUSP00000001672.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000001672Re-query CCDS DB by Protein ID:ENSMUSP00000001672
Original member NCBI NM_013562.2 NP_038590.2 Updated not alive Link to Nucleotide Sequence:NM_013562.2Link to Protein Sequence:NP_038590.2Re-query CCDS DB by Nucleotide ID:NM_013562Re-query CCDS DB by Protein ID:NP_038590
Current member NCBI NM_013562.3 NP_038590.2 Accepted alive Link to Nucleotide Sequence:NM_013562.3Link to Protein Sequence:NP_038590.2Re-query CCDS DB by Nucleotide ID:NM_013562Re-query CCDS DB by Protein ID:NP_038590Link to BLAST:NP_038590.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038590.2 449 P19182 449 100% 0 0

Chromosomal Locations for CCDS 25893.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 40203362 40203451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 40203919 40204014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 40204297 40204425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 40206989 40207123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 40212310 40212418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 40212939 40213117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 40213209 40213259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 40213978 40214135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 40216190 40216314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 40217158 40217242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 40217378 40217482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 40222869 40222956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1350 nt):
ATGCCGAAGAACAAGAAGCGGAACGCTCCCCACCGCGGTGGCGGGGGTGGCGGCGGCTCCGGGGCAGCGA
CGTCGGCGGCCACGGCAGGTGGCCCGCATCGGACTGTTCAACCTTTCAGTGATGAAGATGCATCCATTGA
AACAATGAGCCACTGCAGCGGCTATAGCGATCCTTCCAGTTTTGCGGAGGATGGGCCAGAAGTTCTTGAT
GAGGAAGGAACTCAAGAAGACTTAGAGTACAAGTTGAAGGGATTAATTGACCTAACCCTTGATAAGAGTG
CGAAGACAAGACAGGCAGCTCTTGAAGGTCTTAAGAATGCACTGTCTTCAAAAGTGCTGTATGAGTTTGT
TCTCGAGAGAAGAATGACTTTAACTGATAGCATTGAGCGCTGTCTGAAAAAAGGAAAGAGTGACGAGCAG
CGTGCGGCTGCAGCTGTCGCATCTGTTCTTTGTATTCAGCTGGGCCCTGGATTTGAGAGTGAAGAGATTT
TAAAGACTCTTGGACCAATCCTAAAAAAAATAATTTGTGATGGAGCAGCTAGTATCCAGGCTAGGCAGAC
TTGTGCAACTTGCTTTGGTGTTTGCTGTTTTATTGCCACAGATGATATCACTGAGCTGTATTCAACTCTG
GAATGCTTCGAAAATATCTTCACCAAGTCCTATCTTAAAGAGAAAGACACTAATGTTACTTGCAGCACTC
CAAATACAGTGCTTCACATCAGCTCGCTTCTCGCGTGGACATTATTACTGACCATATGCCCAATCAATGA
GGTGAAGAAAAAGCTGGAGCTGCATTTCCATAAACTTCCAAGCCTCCTTTCTTGTGATGATGTAAACATG
AGAATTGCTGCTGGCGAATCTTTGGCACTTCTGTTTGAATTGGCCAGAGGAATGGAGAGTGACTTTTTTT
ATGAAGATATGGATTCTTTGACCCAGATGCTCCGGGCTCTGGCTACAGATGGAAATAAACACCGTGCCAA
AGTGGACAAGAGAAAGCAGCGGTCTGTCTTCAGAGACGTTCTGAGGGCTGTGGAGGAACGGGATTTTCCA
ACAGAAACTGTTAAATTTGGTCCTGAGCGCATGTATATTGATAGCTGGGTCAAAAAACATACCTATGACA
CGTTTAAAGAGGTTCTTGGATCAGGGATGCAGTACCACTTGCAGACAAATGAATTCCTTCGAAATGTATT
TGAGCTTGGACCCCCTGTGATGCTTGATGCTGCAACACTTAAAACCATGAAGATTTCTCGTTTTGAAAGG
CATTTATATAACTCTGCAGCTTTCAAAGCTCGAACAAAAGCTCGAAGCAAATGCCGAGATAAGAGAGCAG
ATGTTGGAGAATTCTTGTAG

Translation (449 aa):
MPKNKKRNAPHRGGGGGGGSGAATSAATAGGPHRTVQPFSDEDASIETMSHCSGYSDPSSFAEDGPEVLD
EEGTQEDLEYKLKGLIDLTLDKSAKTRQAALEGLKNALSSKVLYEFVLERRMTLTDSIERCLKKGKSDEQ
RAAAAVASVLCIQLGPGFESEEILKTLGPILKKIICDGAASIQARQTCATCFGVCCFIATDDITELYSTL
ECFENIFTKSYLKEKDTNVTCSTPNTVLHISSLLAWTLLLTICPINEVKKKLELHFHKLPSLLSCDDVNM
RIAAGESLALLFELARGMESDFFYEDMDSLTQMLRALATDGNKHRAKVDKRKQRSVFRDVLRAVEERDFP
TETVKFGPERMYIDSWVKKHTYDTFKEVLGSGMQYHLQTNEFLRNVFELGPPVMLDAATLKTMKISRFER
HLYNSAAFKARTKARSKCRDKRADVGEFL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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