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Report for CCDS18318.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18318.1 Public Mus musculus 4 Ifnb1 23 108 98 CCDS HistoryNCBI Gene:15977Re-query CCDS DB by CCDS ID:18318.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18318.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000055671.4 ENSMUSP00000056720.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000055671.4Link to Ensembl Protein Viewer:ENSMUSP00000056720.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000055671Re-query CCDS DB by Protein ID:ENSMUSP00000056720
Original member NCBI NM_010510.1 NP_034640.1 Updated not alive Link to Nucleotide Sequence:NM_010510.1Link to Protein Sequence:NP_034640.1Re-query CCDS DB by Nucleotide ID:NM_010510Re-query CCDS DB by Protein ID:NP_034640
Current member NCBI NM_010510.2 NP_034640.1 Accepted alive Link to Nucleotide Sequence:NM_010510.2Link to Protein Sequence:NP_034640.1Re-query CCDS DB by Nucleotide ID:NM_010510Re-query CCDS DB by Protein ID:NP_034640Link to BLAST:NP_034640.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034640.1 182 P01575 182 100% 0 0

Chromosomal Locations for CCDS 18318.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 88522226 88522774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (549 nt):
ATGAACAACAGGTGGATCCTCCACGCTGCGTTCCTGCTGTGCTTCTCCACCACAGCCCTCTCCATCAACT
ATAAGCAGCTCCAGCTCCAAGAAAGGACGAACATTCGGAAATGTCAGGAGCTCCTGGAGCAGCTGAATGG
AAAGATCAACCTCACCTACAGGGCGGACTTCAAGATCCCTATGGAGATGACGGAGAAGATGCAGAAGAGT
TACACTGCCTTTGCCATCCAAGAGATGCTCCAGAATGTCTTTCTTGTCTTCAGAAACAATTTCTCCAGCA
CTGGGTGGAATGAGACTATTGTTGTACGTCTCCTGGATGAACTCCACCAGCAGACAGTGTTTCTGAAGAC
AGTACTAGAGGAAAAGCAAGAGGAAAGATTGACGTGGGAGATGTCCTCAACTGCTCTCCACTTGAAGAGC
TATTACTGGAGGGTGCAAAGGTACCTTAAACTCATGAAGTACAACAGCTACGCCTGGATGGTGGTCCGAG
CAGAGATCTTCAGGAACTTTCTCATCATTCGAAGACTTACCAGAAACTTCCAAAACTGA

Translation (182 aa):
MNNRWILHAAFLLCFSTTALSINYKQLQLQERTNIRKCQELLEQLNGKINLTYRADFKIPMEMTEKMQKS
YTAFAIQEMLQNVFLVFRNNFSSTGWNETIVVRLLDELHQQTVFLKTVLEEKQEERLTWEMSSTALHLKS
YYWRVQRYLKLMKYNSYAWMVVRAEIFRNFLIIRRLTRNFQN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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