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Report for CCDS29762.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29762.1 Public Mus musculus 19 Ifit3 23 108 98 CCDS HistoryNCBI Gene:15959Re-query CCDS DB by CCDS ID:29762.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29762.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102825.3 ENSMUSP00000099889.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102825.3Link to Ensembl Protein Viewer:ENSMUSP00000099889.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000102825Re-query CCDS DB by Protein ID:ENSMUSP00000099889
Original member Current member NCBI NM_010501.2 NP_034631.1 Accepted alive Link to Nucleotide Sequence:NM_010501.2Link to Protein Sequence:NP_034631.1Re-query CCDS DB by Nucleotide ID:NM_010501Re-query CCDS DB by Protein ID:NP_034631Link to BLAST:NP_034631.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034631.1 403 Q64345 403 100% 0 0

Chromosomal Locations for CCDS 29762.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 34583600 34583604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 34587061 34588267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1212 nt):
ATGAGTGAGGTCAACCGGGAATCTCTGGAAGCGATCCTTCCACAGCTGAAGTGCCATTTCACCTGGAATT
TATTCAGGGAAGGAAGTATGTCCAGTCATATGGAAGACAGGGTGTGCAACCAGGTCGAACATTTAAACTC
TGAGGAGAAGGCAACAATGTATGACTTATTGGCCTACATAAAGCACCTAGATGGCGAAAGCAAGGCCGCC
CTGGAGTGCTTAGGGCAAGCTGAAGATTTAAGGAAGTCAGAGCACAATGATCAATCAGAAATTCGTCGAC
TGGTCACCTGGGGAAACTACGCCTGGATCTACTATCACATGGGCCGTCTCTCAGAAGCTCAGGCTTACGT
TGACAAGGTGAGACAAGTTTGCCAAAAGTTTGCGAATCCTTACAGCATGGAATGCCCAGAACTTGAATGT
GAGGAAGGATGGACACGCCTAAAGTGTGGAAGAAATGAACGAGCAAAAATGTGCTTTGAAAAGGCTCTAG
AAGAGAAGCCAAAGGACCCAGAGTGCTCCTCTGGGATGGCCATCGCCATGTTCCGCCTAGAAGAAAAACC
TGAGAAGCAGTTCTCCGTGGATGCTCTGAAGCAGGCCATGGAGTTGAATCCTCAGAACCAGTACCTGAAA
GTTCTCCTGGCCCTGAAACTGCTGAGGATGGGAGAAGAAGCTGAAGGGGAGCGATTGATTAAAGATGCTT
TGGGGAAAGCTCCTAATCAAACGGATGTCCTCCAAAAGGCAGCTCAGTTTTACAAGAAAAAGGGTAACCT
AGACAGAGCTATTGAGTTACTTGGAAAAGCACTGCGATCCACAGTGAACAACAGTCCTCTCTACTCTTTG
GTCATGTGCCGTTACAGGGAAATACTGGAGCAGCTACAGAATAAAGGAGATGCTGACAGCAGTGAGAGAA
GACAGAGGATGGCAGAACTGAGACGATTAACGATGGAGTTCATGCAGAAGACTCTTCAGAGGAGGCGAAG
TCCTTTGAACTCCTACTCAGATCTCATCGATTTCCCGGAAGTAGAGAGATGCTATCAGATGGTCATCAGT
AAGGAGAGCCCCGATGTTGAGGAAGAAGACCTCTATGAGCGCTATTGCAACCTCCAGGAGTACCACAGGA
AGTCTGAAGACCTCGCAGCCCTGGAGTGTTTGTTGCAATTTCCCAGAAATGAAAGGTCAATCGAGAAGGA
AGAGGTTAAAGAGCAAACATAG

Translation (403 aa):
MSEVNRESLEAILPQLKCHFTWNLFREGSMSSHMEDRVCNQVEHLNSEEKATMYDLLAYIKHLDGESKAA
LECLGQAEDLRKSEHNDQSEIRRLVTWGNYAWIYYHMGRLSEAQAYVDKVRQVCQKFANPYSMECPELEC
EEGWTRLKCGRNERAKMCFEKALEEKPKDPECSSGMAIAMFRLEEKPEKQFSVDALKQAMELNPQNQYLK
VLLALKLLRMGEEAEGERLIKDALGKAPNQTDVLQKAAQFYKKKGNLDRAIELLGKALRSTVNNSPLYSL
VMCRYREILEQLQNKGDADSSERRQRMAELRRLTMEFMQKTLQRRRSPLNSYSDLIDFPEVERCYQMVIS
KESPDVEEEDLYERYCNLQEYHRKSEDLAALECLLQFPRNERSIEKEEVKEQT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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