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Report for CCDS15142.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15142.1 Public Mus musculus 1 Dnajb3 23 108 98 CCDS HistoryNCBI Gene:15504Re-query CCDS DB by CCDS ID:15142.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15142.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000119972.3 ENSMUSP00000112703.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000119972.3Link to Ensembl Protein Viewer:ENSMUSP00000112703.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000119972Re-query CCDS DB by Protein ID:ENSMUSP00000112703
Original member Current member NCBI NM_008299.3 NP_032325.2 Accepted alive Link to Nucleotide Sequence:NM_008299.3Link to Protein Sequence:NP_032325.2Re-query CCDS DB by Nucleotide ID:NM_008299Re-query CCDS DB by Protein ID:NP_032325Link to BLAST:NP_032325.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032325.2 242 O35723 242 99.5868% 0 1

Chromosomal Locations for CCDS 15142.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 88204950 88205678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (729 nt):
ATGGTGGACTACTACGAGGTGCTGGGCGTGCCGCGGCAGGCCTCAGCCGAGGCCATCCGCAAGGCGTACC
GCAAGCTTGCGCTCAAGTGGCACCCGGACAAGAACCCCGAGCACAAGGAGGAGGCCGAGAGGCGGTTCAA
GCAGGTGGCGCAGGCCTACGAGGTCTTATCGGACGTCCGCAAGCGCGAGGTGTACGACCGCTGCGGCGAA
GTGGGCGAGGTGGGCGGAGGCGGCGCGGCGGGCAGCCCGTTCCACGATGCCTTCCAGTACGTCTTCTCCT
TCCGAGACCCCGCGGAGGTCTTCAGGGAGTTCTTCGGGGGCCACGACCCTTTCTCCTTCGACTTCTTCGG
GGGAGACCCCCTTGAGAACTTTTTTGGGGATCGGAGGAGCACCCGTGGAAGCAGAAGCCGAGGGGCTGTA
CCCTTCTCTACCTCCTTTACCGAATTCCCAGGATTTGGGGGTGGCTTCGCTTCGTTAGATACTGGATTCA
CATCCTTCGGTTCTCCAGGAAACTCGGGCCTTTCTTCTTTCTCCATGTCTTGCGGCGGTGGGGCGGCAGG
CAACTACAAGTCGGTGTCAACCTCCACCGAAATAATTAATGGCAAAAAAATCACCACCAAGAGAATCGTT
GAGAATGGTCAAGAAAGGGTGGAAGTGGAAGAAGATGGAGAGTTAAAGTCCCTGATAATTAATGGCAAAG
AGCAGCTGCTTCGCATCAATACTCAGTAA

Translation (242 aa):
MVDYYEVLGVPRQASAEAIRKAYRKLALKWHPDKNPEHKEEAERRFKQVAQAYEVLSDVRKREVYDRCGE
VGEVGGGGAAGSPFHDAFQYVFSFRDPAEVFREFFGGHDPFSFDFFGGDPLENFFGDRRSTRGSRSRGAV
PFSTSFTEFPGFGGGFASLDTGFTSFGSPGNSGLSSFSMSCGGGAAGNYKSVSTSTEIINGKKITTKRIV
ENGQERVEVEEDGELKSLIINGKEQLLRINTQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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