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Report for CCDS23852.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23852.1 Public Mus musculus 10 Hsf2 23 108 98 CCDS HistoryNCBI Gene:15500Re-query CCDS DB by CCDS ID:23852.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23852.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000079833.5 ENSMUSP00000078761.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000079833.5Link to Ensembl Protein Viewer:ENSMUSP00000078761.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000079833Re-query CCDS DB by Protein ID:ENSMUSP00000078761
Original member Current member NCBI NM_008297.3 NP_032323.3 Accepted alive Link to Nucleotide Sequence:NM_008297.3Link to Protein Sequence:NP_032323.3Re-query CCDS DB by Nucleotide ID:NM_008297Re-query CCDS DB by Protein ID:NP_032323Link to BLAST:NP_032323.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032323.3 517 P38533-2 517 100% 0 0

Chromosomal Locations for CCDS 23852.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 57486509 57486601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 57495898 57496006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 57496155 57496282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 57497497 57497621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 57499416 57499491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 57501370 57501431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 57502623 57502710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 57504582 57504730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 57505146 57505382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 57506197 57506302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 57511444 57511528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 57511903 57512198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1554 nt):
ATGAAGCAGAGTTCCAACGTGCCGGCTTTCCTCAGCAAGCTGTGGACGCTTGTGGAGGAAACCCACACCA
ACGAGTTCATCACCTGGAGTCAGAATGGACAAAGTTTTCTGGTCTTGGATGAGCAAAGATTTGCAAAGGA
AATTCTTCCTAAGTACTTCAAACACAATAACATGGCGAGCTTTGTGAGACAACTAAATATGTATGGCTTC
CGAAAAGTAGTGCATATCGAATCTGGAATTATCAAACAGGAAAGAGATGGCCCTGTTGAATTTCAGCATC
CTTATTTCAAGCAAGGCCAGGATGACCTGTTGGAGAACATTAAAAGGAAGGTTTCATCTTCAAAACCAGA
GGAAAATAAAATTCGTCAGGAAGATTTAACAAAAATTATTAGTAGTGCTCAGAAGGTTCAAATAAAACAA
GAAACTATTGAGTCCAGGCTTTCAGAATTAAAAAGTGAGAATGAATCCCTTTGGAAGGAGGTGTCAGAAC
TAAGAGCAAAGCATGCCCAGCAGCAACAAGTTATTCGGAAGATTGTCCAGTTTATTGTTACATTGGTTCA
GAATAATCAACTTGTGAGTTTAAAACGTAAAAGGCCTCTACTTCTAAACACAAATGGAGCCCCAAAGAAG
AATCTATATCAGCACATAGTCAAAGAACCAACTGATAATCACCATCATAAAGTTCCACACAGCAGGACTG
AAGGTTTAAAGTCAAGAGAACGGATTTCAGATGACATAATTATTTATGATGTTACTGACGATAATGTGGA
TGAAGAAAATATTCCAGTTATTCCAGAAACAAATGAGGATGTTGTAGTGGATTCCTCCAACCAGTATCCT
GACATTGTCATTGTTGAAGATGACAACGAGGATGAGTATGCTCCTGTCATTCAGAGTGGAGAGCAGAGTG
AACCAGCCAGAGAACCCTTACGTGTGGGGAGTGCTGGCAGCAGCAGCCCTCTCATGTCTAGTGCTGTCCA
GCTAAACGGCTCCTCCAGTCTGACCTCAGAAGACCCTGTGACCATGATGGACTCCATTCTGAATGACAAC
ATTAACCTGTTAGGAAAGGTTGAGCTGTTGGATTACCTTGACAGTATTGATTGCAGTTTAGAGGACTTCC
AAGCTATGCTCTCAGGAAGACAGTTTAGCATAGACCCAGATCTTCTGGTTGATTCTGAGAATAAGGGACT
AGAAGCTACCAAGAGCAGTGTTGTTCAACATGTGTCAGAAGAGGGAAGAAAATCTAAATCCAAGCCAGAC
AAACAACTTATCCAGTATACTGCCTTTCCACTTCTTGCATTCCTGGATGGGAACTCTGCATCTGCTATTG
AACAGGGGAGTACAACTGCATCGTCAGAAGTTGTGCCTTCTGTAGATAAACCCATAGAAGTCGATGAGCT
CCTGGATAGCAGCCTGGATCCAGAACCGACCCAGAGTAAGCTTGTCCGCCTGGAACCATTGACTGAAGCG
GAAGCTAGTGAAGCCACACTCTTCTATTTATGTGAACTTGCTCCTGCACCTCTGGATAGTGATATGCCGC
TTTTAGATAGTTAA

Translation (517 aa):
MKQSSNVPAFLSKLWTLVEETHTNEFITWSQNGQSFLVLDEQRFAKEILPKYFKHNNMASFVRQLNMYGF
RKVVHIESGIIKQERDGPVEFQHPYFKQGQDDLLENIKRKVSSSKPEENKIRQEDLTKIISSAQKVQIKQ
ETIESRLSELKSENESLWKEVSELRAKHAQQQQVIRKIVQFIVTLVQNNQLVSLKRKRPLLLNTNGAPKK
NLYQHIVKEPTDNHHHKVPHSRTEGLKSRERISDDIIIYDVTDDNVDEENIPVIPETNEDVVVDSSNQYP
DIVIVEDDNEDEYAPVIQSGEQSEPAREPLRVGSAGSSSPLMSSAVQLNGSSSLTSEDPVTMMDSILNDN
INLLGKVELLDYLDSIDCSLEDFQAMLSGRQFSIDPDLLVDSENKGLEATKSSVVQHVSEEGRKSKSKPD
KQLIQYTAFPLLAFLDGNSASAIEQGSTTASSEVVPSVDKPIEVDELLDSSLDPEPTQSKLVRLEPLTEA
EASEATLFYLCELAPAPLDSDMPLLDS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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