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Report for CCDS17667.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17667.1 Public Mus musculus 3 Hsd3b2 23 108 98 CCDS HistoryNCBI Gene:15493Re-query CCDS DB by CCDS ID:17667.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17667.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000107021.7 ENSMUSP00000102635.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107021.7Link to Ensembl Protein Viewer:ENSMUSP00000102635.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107021Re-query CCDS DB by Protein ID:ENSMUSP00000102635
Original member Current member EBI ENSMUST00000107022.7 ENSMUSP00000102636.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107022.7Link to Ensembl Protein Viewer:ENSMUSP00000102636.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107022Re-query CCDS DB by Protein ID:ENSMUSP00000102636
Original member Current member EBI ENSMUST00000177651.1 ENSMUSP00000136533.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000177651.1Link to Ensembl Protein Viewer:ENSMUSP00000136533.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000177651Re-query CCDS DB by Protein ID:ENSMUSP00000136533
Original member Current member NCBI NM_001359741.1 NP_001346670.1 Accepted alive Link to Nucleotide Sequence:NM_001359741.1Link to Protein Sequence:NP_001346670.1Re-query CCDS DB by Nucleotide ID:NM_001359741Re-query CCDS DB by Protein ID:NP_001346670Link to BLAST:NP_001346670.1
Original member Current member NCBI NM_153193.3 NP_694873.2 Accepted alive Link to Nucleotide Sequence:NM_153193.3Link to Protein Sequence:NP_694873.2Re-query CCDS DB by Nucleotide ID:NM_153193Re-query CCDS DB by Protein ID:NP_694873Link to BLAST:NP_694873.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001346670.1 373 P26149 373 100% 0 0
NP_694873.2 373 P26149 373 100% 0 0

Chromosomal Locations for CCDS 17667.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 98711506 98712317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 98713428 98713592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 98716416 98716560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1122 nt):
ATGCCTGGGTGGAGCTGCCTGGTGACTGGAGCAGGAGGGTTTTTGGGGCAGAGGATCATCCAGTTGTTGG
TGCAAGAGGAAGATCTGGAGGAGATCAGGGTCCTGGACAAGGTCTTCAGACCAGAAACAAGGAAGGAATT
CTTCAACCTAGAGACAAGCATCAAGGTGACAGTGTTGGAAGGAGACATTCTTGACACCCAGTACCTGAGG
AGAGCTTGCCAGGGCATCTCTGTTGTCATCCATACTGCTGCCATCATTGATGTCACAGGTGTCATTCCCA
GGCAGACCATCCTAGATGTCAATCTGAAAGGTACCCAGAACTTATTGGAGGCCTGTATCCAAGCCAGTGT
GCCAGCCTTCATCTTCTCCAGCTCAGTTGATGTTGCAGGGCCCAACTCTTACAAGGAGATTGTCTTGAAT
GGCCATGAGGAAGAGTGTCATGAAAGTACATGGTCTGATCCATACCCATACAGCAAAAAGATGGCTGAGA
AGGCAGTGCTGGCAGCCAATGGGAGCATGCTGAAAAATGGTGGCACTTTGCAAACTTGTGCATTAAGGCC
CATGTGCATTTATGGGGAGAGAAGTCCACTCATTTCTAACATAATAATTATGGCCCTTAAACATAAGGGT
ATTCTGAGAAGTTTTGGCAAATTCAACACAGCCAACCCAGTATATGTGGGCAATGTAGCCTGGGCACACA
TTCTGGCTGCCAGGGGCCTTCGAGACCCCAAGAAGTCACCAAATATCCAAGGAGAGTTCTACTACATCTC
AGATGACACCCCTCACCAAAGCTTTGATGATATAAGTTACACCTTGAGCAAGGAGTGGGGCTTCTGCCTT
GATTCCAGCTGGAGCCTTCCTGTGCCCCTACTGTACTGGCTTGCATTCCTGCTGGAAACTGTGAGCTTCC
TCCTGAGTCCAATCTACAGATATATACCTCCCTTTAACCGCCACTTGGTCACACTGTCAGGTAGCACATT
CACTTTCTCCTACAAGAAAGCTCAGCGAGATCTGGGCTATGAGCCACTTGTCAGCTGGGAGGAAGCCAAG
CAGAAAACCTCAGAGTGGATCGGGACACTAGTGGAGCAGCACAGGGAGACACTGGACACAAAGTCTCAGT
GA

Translation (373 aa):
MPGWSCLVTGAGGFLGQRIIQLLVQEEDLEEIRVLDKVFRPETRKEFFNLETSIKVTVLEGDILDTQYLR
RACQGISVVIHTAAIIDVTGVIPRQTILDVNLKGTQNLLEACIQASVPAFIFSSSVDVAGPNSYKEIVLN
GHEEECHESTWSDPYPYSKKMAEKAVLAANGSMLKNGGTLQTCALRPMCIYGERSPLISNIIIMALKHKG
ILRSFGKFNTANPVYVGNVAWAHILAARGLRDPKKSPNIQGEFYYISDDTPHQSFDDISYTLSKEWGFCL
DSSWSLPVPLLYWLAFLLETVSFLLSPIYRYIPPFNRHLVTLSGSTFTFSYKKAQRDLGYEPLVSWEEAK
QKTSEWIGTLVEQHRETLDTKSQ


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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