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Report for CCDS21654.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21654.1 Public Mus musculus 7 Hpx 23 108 98 CCDS HistoryNCBI Gene:15458Re-query CCDS DB by CCDS ID:21654.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21654.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033185.9 ENSMUSP00000033185.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033185.9Link to Ensembl Protein Viewer:ENSMUSP00000033185.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000033185Re-query CCDS DB by Protein ID:ENSMUSP00000033185
Original member Current member NCBI NM_017371.2 NP_059067.2 Accepted alive Link to Nucleotide Sequence:NM_017371.2Link to Protein Sequence:NP_059067.2Re-query CCDS DB by Nucleotide ID:NM_017371Re-query CCDS DB by Protein ID:NP_059067Link to BLAST:NP_059067.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_059067.2 460 Q91X72 460 100% 0 0

Chromosomal Locations for CCDS 21654.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 105591682 105591941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105592080 105592242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105592326 105592456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105595071 105595199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105595460 105595672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105596261 105596414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105599260 105599378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105599662 105599733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105599816 105599874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105600008 105600090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1383 nt):
ATGGCTAGGACAGCAGTGGCGCTAAATATCCTGGTGTTGCTGGGCCTGTGCTGGTCCCTGGCTGTTGCCA
GCCCTCTTCCTACTGCCAACGGGAGAGTTGCCGAAGTTGAAAATGGGACCAAGCCAGATTCAGATGTACC
CGAACACTGCTTGGATACCTGGAGCTTTGATGCTGCGACCATGGATCACAATGGGACCATGCTGTTCTTT
AAAGGGGAGTTTGTGTGGAGGGGTCACTCAGGGACCCGGGAGTTGATCTCAGCGAGGTGGAAGAATCCCA
TCACCTCAGTGGATGCTGCATTCCGTGGTCCTGACAGTGTCTTCCTGATCAAGGAAGACAAAGTCTGGGT
GTACCCTCCTGAAAAGAAGGAAAACGGGTATCCAAAGTTGTTCCAAGAAGAGTTTCCTGGAATCCCATAC
CCACCAGACGCAGCTGTGGAATGCCACCGTGGAGAGTGCCAGAGTGAAGGCGTCCTTTTCTTCCAAGGTA
ACCGCAAGTGGTTCTGGGACTTTGCCACAAGAACCCAAAAGGAACGTTCCTGGTCAACTGTTGGGAATTG
CACTGCGGCCTTGAGGTGGCTTGAACGCTACTACTGCTTCCAGGGTAACAAGTTCCTGCGATTCAACCCT
GTCACAGGAGAGGTGCCTCCCAGATACCCTCTGGATGCCCGTGACTACTTCGTATCCTGCCCTGGCAGAG
GCCATGGTAGACCCAGAAATGGAACTGCTCATGGAAATAGCACCCATCCTATGCATTCACGTTGTAGCCC
AGATCCTGGCCTGACTGCACTGCTGTCTGACCATCGCGGTGCCACCTATGCCTTCACTGGCTCCCACTAC
TGGCGTCTGGACTCCAGCCGTGATGGATGGCATAGCTGGCCCATTGCTCATCACTGGCCTCAGGGTCCTT
CAACAGTAGATGCTGCCTTTTCCTGGGATGATAAAGTCTATCTGATCCAGGGCACTCAAGTGTATGTCTT
CCTGACAAAGGGAGGCAATAACCTAGTAAGTGGTTATCCAAAGCGGCTGGAGAAGGAACTTGGGAGCCCT
CCTGGGATCAGCCTTGAGACCATAGATGCAGCCTTTTCCTGCCCTGGTTCTTCCAGGCTCTATGTCTCAT
CAGGACGGCGGCTTTGGTGGCTGGACCTGAAGTCAGGAGCCCAGGCAACATGGACAGAGGTTTCCTGGCC
CCATGAGAAAGTTGATGGGGCCCTGTGTTTGGACAAGTCTCTTGGCCCCAACACATGTTCTTCCAATGGT
TCCAGCTTGTACTTTATCCATGGGCCCAATTTGTACTGCTATAGCAGTATAGACAAACTGAATGCAGCCA
AGAGTCTGCCTCAGCCTCAGAAGGTGAACAGCATCCTTGGCTGCAGTCAGTAA

Translation (460 aa):
MARTAVALNILVLLGLCWSLAVASPLPTANGRVAEVENGTKPDSDVPEHCLDTWSFDAATMDHNGTMLFF
KGEFVWRGHSGTRELISARWKNPITSVDAAFRGPDSVFLIKEDKVWVYPPEKKENGYPKLFQEEFPGIPY
PPDAAVECHRGECQSEGVLFFQGNRKWFWDFATRTQKERSWSTVGNCTAALRWLERYYCFQGNKFLRFNP
VTGEVPPRYPLDARDYFVSCPGRGHGRPRNGTAHGNSTHPMHSRCSPDPGLTALLSDHRGATYAFTGSHY
WRLDSSRDGWHSWPIAHHWPQGPSTVDAAFSWDDKVYLIQGTQVYVFLTKGGNNLVSGYPKRLEKELGSP
PGISLETIDAAFSCPGSSRLYVSSGRRLWWLDLKSGAQATWTEVSWPHEKVDGALCLDKSLGPNTCSSNG
SSLYFIHGPNLYCYSSIDKLNAAKSLPQPQKVNSILGCSQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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