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Report for CCDS20142.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20142.1 Public Mus musculus 6 Hoxa4 23 108 98 CCDS HistoryNCBI Gene:15401Re-query CCDS DB by CCDS ID:20142.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20142.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000101395.2 ENSMUSP00000098943.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000101395.2Link to Ensembl Protein Viewer:ENSMUSP00000098943.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000101395Re-query CCDS DB by Protein ID:ENSMUSP00000098943
Original member Current member NCBI NM_008265.4 NP_032291.1 Accepted alive Link to Nucleotide Sequence:NM_008265.4Link to Protein Sequence:NP_032291.1Re-query CCDS DB by Nucleotide ID:NM_008265Re-query CCDS DB by Protein ID:NP_032291Link to BLAST:NP_032291.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032291.1 285 P06798 285 98.2456% 0 5

Chromosomal Locations for CCDS 20142.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 52190342 52190688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 52191178 52191688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (858 nt):
ATGACCATGAGCTCGTTTTTGATAAACTCCAACTACATCGAGCCCAAGTTCCCTCCTTTCGAGGAGTTCG
CCCCGCACGGTGGCCCGGGCGGTGGGGACGGCGCCGTGGGCGGGGGTCCCGGCTACCCGCGGCCCCAGAG
CGCCCCGCACCTGCCGGCCCCGAACCCGCACGCGGCCCGCCAGCCCCCCGCTTACTACGCGCCGCGGGCG
CGCGAGCCCAGCTACCCCGGGGGCCTGTACCCCGCGCCCGCCGCCGCCTGTCCCTACGCCTGCCGCGGGG
CCAGCCCCGCGCGACCCGAGCAGTCCCCGGCCCCCGGCGCGCACCCCAGCCCGGCCCCGCAGCCCCCCGC
GCCCCCTCGGCACTGCGCTCCCGGCCCCACCACCCCGGCTGTCGCGACGGGGGGCAGCGCCCCCGCGTGC
CCGCTGCTGCTGGCGGACCAGGGCCCGGCGGGCCCGAAGGGCAAGGAGCCGGTGGTGTACCCCTGGATGA
AGAAGATCCACGTGAGCGCCGTCAACTCCAGTTATAACGGAGGCGAACCTAAGCGCTCTCGAACCGCCTA
TACCCGGCAGCAAGTCTTGGAACTGGAGAAGGAATTCCACTTTAACCGCTACCTGACCCGGCGGCGCCGC
ATCGAGATCGCCCACACGCTCTGCTTGTCGGAGCGCCAGGTCAAGATCTGGTTTCAGAACCGGAGAATGA
AGTGGAAGAAAGACCACAAACTTCCCAACACCAAGATGCGATCTTCCAACACTGCCTCGGCCCCTGCCGG
CCCGCCTGGGAAAGCACAAACTCACAGCCCACACCCCCATCCCCACCCTCTCCCTGGTGCTTCCACACCC
ATTCCCTCCTCCATATAA

Translation (285 aa):
MTMSSFLINSNYIEPKFPPFEEFAPHGGPGGGDGAVGGGPGYPRPQSAPHLPAPNPHAARQPPAYYAPRA
REPSYPGGLYPAPAAACPYACRGASPARPEQSPAPGAHPSPAPQPPAPPRHCAPGPTTPAVATGGSAPAC
PLLLADQGPAGPKGKEPVVYPWMKKIHVSAVNSSYNGGEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRR
IEIAHTLCLSERQVKIWFQNRRMKWKKDHKLPNTKMRSSNTASAPAGPPGKAQTHSPHPHPHPLPGASTP
IPSSI


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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