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Report for CCDS28031.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28031.1 Public Mus musculus 16 Hira 23 108 98 CCDS HistoryNCBI Gene:15260Re-query CCDS DB by CCDS ID:28031.1See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28031.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000004222.13 ENSMUSP00000004222.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000004222.13Link to Ensembl Protein Viewer:ENSMUSP00000004222.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000004222Re-query CCDS DB by Protein ID:ENSMUSP00000004222
Original member Current member NCBI NM_010435.2 NP_034565.2 Accepted alive Link to Nucleotide Sequence:NM_010435.2Link to Protein Sequence:NP_034565.2Re-query CCDS DB by Nucleotide ID:NM_010435Re-query CCDS DB by Protein ID:NP_034565Link to BLAST:NP_034565.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034565.2 1015 Q61666-1 1015 100% 0 0

Chromosomal Locations for CCDS 28031.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 18877483 18877519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18894774 18894836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18896454 18896564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18897698 18897788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18899363 18899457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18910648 18910743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18912046 18912206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18916440 18916607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18918976 18919089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18922317 18922387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18922854 18922959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18925648 18925863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18927438 18927523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18932868 18933062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18935018 18935179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18946346 18946547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18947414 18947518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18949136 18949284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18951175 18951336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18951657 18951715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18952064 18952169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18953995 18954117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18954610 18954773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18956169 18956257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18969440 18969556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3048 nt):
ATGAAGCTCTTGAAGCCAACCTGGGTCAACCACAATGGGAAGCCAATTTTTTCAGTTGATATTCACCCTG
ATGGGACCAAGTTTGCAACTGGAGGACAAGGGCAGGATTCTGGGAAGGTTGTGATCTGGAATATGTCTCC
AGTCCTCCAGGAGGATGACGAGAAGGATGAAAATATTCCCAAGATGCTTTGCCAGATGGACAATCACTTA
GCATGTGTGAACTGTGTGCGGTGGTCAAACAGTGGGATGTATTTAGCTTCTGGGGGAGATGACAAACTGA
TTATGGTGTGGAAGCGGGCTACGTACATTGGGCCCAGCACTGTGTTTGGTTCCAGTGGTAAGCTTGCCAA
TGTGGAGCAATGGCGGTGTGTCTCCATCCTCCGGAGTCACTCAGGCGATGTGATGGATGTAGCATGGTCT
CCCCACGACGCCTGGCTGGCCTCATGCAGCGTGGATAACACTGTTGTCATTTGGAATGCCGTGAAGTTCC
CAGAAATTCTTGCAACTCTGAGAGGTCATTCTGGCTTAGTAAAAGGTTTGACTTGGGATCCCGTTGGTAA
ATATATTGCCTCTCAAGCTGATGATCGAAGTTTGAAGGTATGGAGGACGCTGGACTGGCAGCTAGAGACT
AGCATCACCAAGCCTTTTGATGAGTGTGGAGGAACGACGCATGTTCTCCGGCTTAGTTGGTCACCTGATG
GCCATTACCTGGTATCTGCCCATGCCATGAATAATTCTGGCCCCACTGCTCAGATCATCGAAAGAGAGGG
CTGGAAGACCAACATGGACTTTGTGGGTCACCGGAAAGCTGTGACTGTTGTGAAATTCAACCCAAAAATC
TTCAAGAAGAAGCAGAAGAATGGGAGCTCTACAAAGCCCAGCTGCCCATACTGCTGCTGTGCTGTTGGCA
GCAAGGACCGCTCACTCTCTGTCTGGCTCACATGTTTGAAACGGCCTCTGGTTGTCATCCATGAACTGTT
TGACAAGTCCATCATGGATATTTCCTGGACTCTGAATGGGTTGGGTATCCTGGTGTGCTCCATGGACGGC
TCTGTGGCGTTCCTTGATTTCTCTCAGGATGAACTCGGAGACCCCCTGAGTGAGGAGGAAAAGAGCCGAA
TTCACCAGTCTACCTATGGCAAGAGCCTGGCAATAATGACTGAGGCCCAGCTTTCCACAGCTGTTATTGA
GAACCCTGAGATGCTCAAGTACCAGCGGAGACAGCAACAGCAGCAGCTGGATCAGAAGAATGCCACTACT
AGGGAGACAAGCTCAGCATCCTCAGTCACGGGTGTGGTCAATGGGGAAAGTCTAGAAGATATCAGAAAGA
ATCTTTTGAAGAAACAAGTGGAAACTCGGACAGCAGATGGTCGGAGGAGAATCACGCCTCTTTGCATAGC
ACAGCTGGACACTGGGGACTTCTCCACGGCATTCTTCAACAGCATCCCACTCTCCAGCTCCCTAGCAGGC
ACCATGCTCTCCTCTCCTAGTGGTCAGCAGCTACTACCACTGGACTCCAGTACCCCCTCCTTCGGCGCCT
CAAAGCCTTGCACAGAACCAGTGGCAGCCACCAGTGCCAGGCCTACAGGCGAATCTGTCAGTAAGGACAG
TATGAATGCTACCTCTACTCCTGCTGCATCGTCACCCTCTGTGTTAACAACCCCATCCAAGATTGAACCC
ATGAAAGCATTTGATTCCCGGTTCACAGAACGGTCCAAAGCCACACCAGGTGCTCCTTCCTTGACCAGTG
TGATTCCAACAGCTGTTGAAAGGTTGAAAGAGCAGAACCTCGTCAAGGAGCTGAGGTCCCGGGAACTGGA
GAGCAGCAGTGACAGCGATGAGAAGGTCCACCTAGCCAAGCCCTCTTCACTGTCCAAGCGCAAACTTGAG
CTTGAGGTAGAGACGGTGGAAAAGAAGAAGAAAGGTCGCCCTAGGAAGGATTCACGTCTTTTACCCATGT
CTCTGTCCGTCCAGTCTCCAGCTGCCCTGTCTACAGAGAAGGAGGCCATGTGTCTGTCTGCACCAGCACT
TGCACTGAAGCTGCCAATTCCAGGCCCACAGAGAGCGTTCACCCTCCAGGTGAGCTCTGACCCCTCCATG
TACATTGAGGTGGAGAATGAAGTGACCACCGTTGGGGGGATAAGGCTGAGTCGCCTGAAGTGCAACCGTG
AAGGGAAGGAGTGGGAGACAGTGCTCAGCAGTCGCGTCCTCACTGCTGCCGGCAGCTGTGATGTGGTATG
TGTTGCCTGTGAAAAGAGGATGCTGTCGGTGTTCTCTACCTGTGGTCGCCGTCTCCTCCCTCCCATCCTC
CTTCCATCTCCAATCTCTACTTTGCACTGCACGGGCCCCTACGTCATGGCACTCACCGCTGCAGCCACAC
TGTCTGTCTGGGATGTTCACAGACAGGTGGTTGTGGTGAAAGAAGAATCTCTACACTCCATCTTGTCAGG
AAGTGATATGACGGTGTCACAGATCTTGCTAACACAGCATGGAATCCCAGTGATGAATTTGTCTGATGGG
AAAGCATACTGCTTTAATCCATCCCTCTCCACATGGAACCTGGTTTCTGACAAGCAAGATTCATTGGCCC
AGTGTGCAGACTTCAGGAACAGCCTGCCGTCCCAGGATGCCATGCTTTGTTCAGGACCGTTAGCCATAAT
TCAGGGCCGCACCTCCAACTCTGGAAGGCAAGCTGCCCGGCTCTTCTCCGTGCCTCATGTGGTACAGCAG
GAGACCACACTGGCCTACCTAGAGAACCAGGTTGCTGCGGCACTTACCCTGCAGTCAAGCCACGAGTATC
GTCACTGGCTCCTCCTTTATGCTCGGTACCTTGTGAATGAAGGGTTTGAATACCGCCTCCGTGAAATATG
CAAGGACTTGCTGGGTCCAGTTCACTGCTCCACTGGAAGTCAGTGGGAGTCAACAGTAGTGGGTCTGCGG
AAAAGGGAGCTGCTGAAGGAACTGTTGCCAGTCATTGGGCAGAATCTTCGATTCCAGCGCCTCTTTACTG
AGTGCCAGGAACAACTGGACATCCTGAGAGACAAGTAG

Translation (1015 aa):
MKLLKPTWVNHNGKPIFSVDIHPDGTKFATGGQGQDSGKVVIWNMSPVLQEDDEKDENIPKMLCQMDNHL
ACVNCVRWSNSGMYLASGGDDKLIMVWKRATYIGPSTVFGSSGKLANVEQWRCVSILRSHSGDVMDVAWS
PHDAWLASCSVDNTVVIWNAVKFPEILATLRGHSGLVKGLTWDPVGKYIASQADDRSLKVWRTLDWQLET
SITKPFDECGGTTHVLRLSWSPDGHYLVSAHAMNNSGPTAQIIEREGWKTNMDFVGHRKAVTVVKFNPKI
FKKKQKNGSSTKPSCPYCCCAVGSKDRSLSVWLTCLKRPLVVIHELFDKSIMDISWTLNGLGILVCSMDG
SVAFLDFSQDELGDPLSEEEKSRIHQSTYGKSLAIMTEAQLSTAVIENPEMLKYQRRQQQQQLDQKNATT
RETSSASSVTGVVNGESLEDIRKNLLKKQVETRTADGRRRITPLCIAQLDTGDFSTAFFNSIPLSSSLAG
TMLSSPSGQQLLPLDSSTPSFGASKPCTEPVAATSARPTGESVSKDSMNATSTPAASSPSVLTTPSKIEP
MKAFDSRFTERSKATPGAPSLTSVIPTAVERLKEQNLVKELRSRELESSSDSDEKVHLAKPSSLSKRKLE
LEVETVEKKKKGRPRKDSRLLPMSLSVQSPAALSTEKEAMCLSAPALALKLPIPGPQRAFTLQVSSDPSM
YIEVENEVTTVGGIRLSRLKCNREGKEWETVLSSRVLTAAGSCDVVCVACEKRMLSVFSTCGRRLLPPIL
LPSPISTLHCTGPYVMALTAAATLSVWDVHRQVVVVKEESLHSILSGSDMTVSQILLTQHGIPVMNLSDG
KAYCFNPSLSTWNLVSDKQDSLAQCADFRNSLPSQDAMLCSGPLAIIQGRTSNSGRQAARLFSVPHVVQQ
ETTLAYLENQVAAALTLQSSHEYRHWLLLYARYLVNEGFEYRLREICKDLLGPVHCSTGSQWESTVVGLR
KRELLKELLPVIGQNLRFQRLFTECQEQLDILRDK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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