NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS17790.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17790.1 Public Mus musculus 3 Mfsd14a 23 108 98 CCDS HistoryNCBI Gene:15247Re-query CCDS DB by CCDS ID:17790.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17790.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029570.8 ENSMUSP00000029570.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029570.8Link to Ensembl Protein Viewer:ENSMUSP00000029570.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000029570Re-query CCDS DB by Protein ID:ENSMUSP00000029570
Original member NCBI NM_008246.2 NP_032272.2 Updated not alive Link to Nucleotide Sequence:NM_008246.2Link to Protein Sequence:NP_032272.2Re-query CCDS DB by Nucleotide ID:NM_008246Re-query CCDS DB by Protein ID:NP_032272
Current member NCBI NM_008246.3 NP_032272.2 Accepted alive Link to Nucleotide Sequence:NM_008246.3Link to Protein Sequence:NP_032272.2Re-query CCDS DB by Nucleotide ID:NM_008246Re-query CCDS DB by Protein ID:NP_032272Link to BLAST:NP_032272.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032272.2 490 P70187 490 100% 0 0

Chromosomal Locations for CCDS 17790.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 116632274 116632480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116633722 116633885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116634903 116635000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116636278 116636390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116640387 116640458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116641247 116641360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116641710 116641928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116645366 116645480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116647782 116647909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116648519 116648581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116651404 116651499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116662395 116662478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1473 nt):
ATGACCCAGGGGAAGAAAAAGAAACGGGCCGCGAACCGCAGTATCATGCTGGCCAAAAAGATCATCATTA
AGGACGGAGGCACGCCTCAAGGAATAGGCTCCCCTAGTGTGTATCATGCGGTTATTGTCATCTTTTTGGA
GTTTTTTGCTTGGGGACTACTGACAGCACCCACATTGGTGGTATTGCATGAAACCTTCCCTAAACATACA
TTTCTGATGAATGGCCTAATTCAAGGAGTAAAGGGTTTGTTGTCATTCCTCAGTGCCCCACTTATTGGTG
CTCTTTCTGATGTTTGGGGCCGAAAGTCCTTCCTGCTGCTAACAGTGTTTTTCACGTGTGCCCCTATTCC
TCTGATGAAGATCAGCCCGTGGTGGTACTTTGCTGTTATCTCTGTTTCTGGGGTTTTTGCAGTAACCTTC
TCTGTGGTATTTGCATATGTAGCAGATATAACTCAAGAGCATGAAAGGAGTATGGCTTACGGACTGGTTT
CTGCTACGTTCGCTGCCAGCTTAGTTACCAGCCCTGCAATTGGAGCTTACCTTGGACGAGTGTATGGGGA
CAGCTTAGTGGTGGTCCTTGCTACAGCAATAGCTCTGCTAGACATCTGTTTTATCCTTGTTGCTGTGCCA
GAGTCATTGCCTGAGAAGATGCGGCCAGCATCGTGGGGAGCTCCCATTTCATGGGAACAGGCTGACCCCT
TTGCATCTTTAAAAAAAGTGGGCCAAGACTCCATAGTGCTGCTGATCTGTATCACGGTGTTTCTCTCCTA
CCTACCTGAAGCCGGCCAGTACTCCAGCTTCTTCTTATACCTCAGACAGATAATGAAATTTTCCCCAGAA
AGTGTGGCAGCCTTCATAGCAGTCCTTGGCATTCTGTCCATTATTGCACAGACCATAGTCTTGAGTTTAC
TCATGAGGTCAATTGGAAATAAGAACACCATCTTACTGGGTCTGGGATTTCAAATATTGCAGCTGGCATG
GTACGGCTTTGGTTCCGAACCTTGGATGATGTGGGCTGCTGGGGCAGTGGCAGCCATGTCTAGCATCACC
TTTCCAGCTGTTAGCGCCCTTGTTTCACGGACTGCTGACGCGGATCAACAGGGTGTTGTTCAAGGGATGA
TAACAGGGATCAGAGGATTGTGCAATGGTCTGGGACCAGCCCTTTATGGGTTCATTTTCTACATATTCCA
TGTGGAACTTAAAGAACTGCCAATCACAGGGACAGACCTGGGGACAAACACAAGCCCTCAGCATCACTTT
GAACAGAATTCCATCATCCCTGGTCCCCCTTTCCTCTTTGGAGCCTGTTCGGTACTGCTGGCTCTGCTCG
TTGCCTTGTTTATTCCGGAACACACTAATTTAAGTTTAAGGTCCAGCAGTTGGAGGAAGCACTGTGGCAG
TCACAGCCATCCTCACAGTACACAAGCGCCAGGAGAGGCCAAAGAACCTTTACTCCAGGACACGAATGTG
TGA

Translation (490 aa):
MTQGKKKKRAANRSIMLAKKIIIKDGGTPQGIGSPSVYHAVIVIFLEFFAWGLLTAPTLVVLHETFPKHT
FLMNGLIQGVKGLLSFLSAPLIGALSDVWGRKSFLLLTVFFTCAPIPLMKISPWWYFAVISVSGVFAVTF
SVVFAYVADITQEHERSMAYGLVSATFAASLVTSPAIGAYLGRVYGDSLVVVLATAIALLDICFILVAVP
ESLPEKMRPASWGAPISWEQADPFASLKKVGQDSIVLLICITVFLSYLPEAGQYSSFFLYLRQIMKFSPE
SVAAFIAVLGILSIIAQTIVLSLLMRSIGNKNTILLGLGFQILQLAWYGFGSEPWMMWAAGAVAAMSSIT
FPAVSALVSRTADADQQGVVQGMITGIRGLCNGLGPALYGFIFYIFHVELKELPITGTDLGTNTSPQHHF
EQNSIIPGPPFLFGACSVLLALLVALFIPEHTNLSLRSSSWRKHCGSHSHPHSTQAPGEAKEPLLQDTNV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH