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Report for CCDS23986.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23986.1 Public Mus musculus 10 Hcn2 23 108 98 CCDS HistoryNCBI Gene:15166Re-query CCDS DB by CCDS ID:23986.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 23986.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020581.2 ENSMUSP00000020581.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020581.2Link to Ensembl Protein Viewer:ENSMUSP00000020581.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000020581Re-query CCDS DB by Protein ID:ENSMUSP00000020581
Original member Current member EBI ENSMUST00000099513.7 ENSMUSP00000097113.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099513.7Link to Ensembl Protein Viewer:ENSMUSP00000097113.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000099513Re-query CCDS DB by Protein ID:ENSMUSP00000097113
Original member Current member NCBI NM_008226.2 NP_032252.1 Accepted alive Link to Nucleotide Sequence:NM_008226.2Link to Protein Sequence:NP_032252.1Re-query CCDS DB by Nucleotide ID:NM_008226Re-query CCDS DB by Protein ID:NP_032252Link to BLAST:NP_032252.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032252.1 863 O88703 863 100% 0 0

Chromosomal Locations for CCDS 23986.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 79716669 79717219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79724388 79724811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79726147 79726308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79728893 79729111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79730847 79730993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79733671 79733911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79734063 79734227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79734858 79735540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2592 nt):
ATGGATGCGCGCGGGGGCGGCGGGCGGCCGGGCGATAGTCCGGGCACGACCCCTGCGCCGGGGCCGCCGC
CACCGCCGCCGCCGCCCGCGCCCCCTCAGCCTCAGCCACCACCCGCGCCACCCCCGAACCCCACGACCCC
CTCGCACCCGGAGTCGGCGGACGAGCCCGGCCCGCGCGCCCGGCTCTGCAGCCGCGACAGCGCCTGCACC
CCTGGCGCGGCCAAGGGCGGCGCGAATGGCGAGTGCGGGCGCGGGGAGCCGCAGTGCAGCCCCGAGGGCC
CCGCGCGCGGCCCCAAGGTTTCGTTCTCATGCCGCGGGGCGGCCTCCGGGCCCTCGGCGGCCGAGGAGGC
GGGCAGCGAGGAGGCGGGCCCGGCGGGTGAGCCGCGCGGCAGCCAGGCTAGCTTCCTGCAGCGCCAATTC
GGGGCGCTTCTGCAGCCCGGCGTCAACAAGTTCTCCCTGCGGATGTTCGGCAGCCAGAAGGCCGTGGAGC
GCGAGCAGGAACGCGTGAAGTCGGCGGGGGCCTGGATCATCCACCCCTACAGCGACTTCAGGTTCTACTG
GGACTTCACCATGCTGTTGTTCATGGTGGGAAATCTCATTATCATTCCCGTGGGCATCACTTTCTTCAAG
GACGAGACCACCGCGCCCTGGATCGTCTTCAACGTGGTCTCGGACACTTTCTTCCTCATGGACTTGGTGT
TGAACTTCCGCACCGGCATTGTTATTGAGGACAACACGGAGATCATCCTGGACCCCGAGAAGATAAAGAA
GAAGTACTTGCGTACGTGGTTCGTGGTGGACTTCGTGTCATCCATCCCGGTGGACTACATCTTCCTCATA
GTGGAGAAGGGAATCGACTCCGAGGTCTACAAGACAGCGCGTGCTCTGCGCATCGTGCGCTTCACCAAGA
TCCTCAGTCTGCTGCGGCTGCTGCGGCTATCACGGCTCATCCGATATATCCACCAGTGGGAAGAGATTTT
CCACATGACCTACGACCTGGCAAGTGCAGTGATGCGCATCTGTAACCTGATCAGCATGATGCTACTGCTC
TGCCACTGGGACGGTTGCCTGCAGTTCCTGGTGCCCATGCTGCAAGACTTCCCCAGCGACTGCTGGGTGT
CCATCAACAACATGGTGAACCACTCGTGGAGCGAGCTCTACTCGTTCGCGCTCTTCAAGGCCATGAGCCA
CATGCTGTGCATCGGCTACGGGCGGCAGGCGCCCGAGAGCATGACAGACATCTGGCTGACCATGCTCAGC
ATGATCGTAGGCGCCACCTGCTATGCCATGTTCATTGGGCACGCCACTGCGCTCATCCAGTCCCTGGATT
CGTCACGGCGCCAATACCAGGAGAAGTACAAGCAAGTAGAGCAATACATGTCCTTCCACAAACTGCCCGC
TGACTTCCGCCAGAAGATCCACGATTACTATGAACACCGGTACCAAGGGAAGATGTTTGATGAGGACAGC
ATCCTTGGGGAACTCAACGGGCCACTGCGTGAGGAGATTGTGAACTTCAACTGCCGGAAGCTGGTGGCTT
CCATGCCGCTGTTTGCCAATGCAGACCCCAACTTCGTCACAGCCATGCTGACAAAGCTCAAATTTGAGGT
CTTCCAGCCTGGAGATTACATCATCCGAGAGGGGACCATCGGGAAGAAGATGTACTTCATCCAGCATGGG
GTGGTGAGCGTGCTCACCAAGGGCAACAAGGAGATGAAGCTGTCGGATGGCTCCTATTTCGGGGAGATCT
GCTTGCTCACGAGGGGCCGGCGTACGGCCAGCGTGCGAGCTGACACCTACTGTCGCCTCTACTCACTGAG
TGTGGACAATTTCAACGAGGTGCTGGAGGAATACCCCATGATGCGGCGTGCCTTTGAGACTGTGGCTATT
GACCGGCTAGATCGCATAGGCAAGAAGAACTCCATCTTGCTGCACAAGGTTCAGCATGATCTCAGCTCAG
GTGTGTTCAACAACCAGGAGAATGCCATCATCCAGGAGATTGTCAAATATGACCGTGAGATGGTGCAGCA
GGCAGAGCTTGGCCAGCGTGTGGGGCTCTTCCCACCACCGCCACCACCGCAGGTCACATCGGCCATTGCC
ACCCTACAGCAGGCTGTGGCCATGAGCTTCTGCCCGCAGGTGGCCCGCCCGCTCGTGGGGCCCCTGGCGC
TAGGCTCCCCACGCCTAGTGCGCCGCGCGCCCCCAGGGCCTCTGCCTCCTGCAGCCTCGCCAGGGCCACC
CGCAGCAAGCCCCCCGGCTGCACCCTCGAGCCCTCGGGCACCGCGGACCTCACCCTACGGTGTGCCTGGC
TCTCCGGCAACGCGTGTGGGGCCCGCATTGCCCGCACGTCGCCTGAGCCGCGCCTCGCGCCCACTGTCCG
CCTCGCAGCCCTCGCTGCCCCATGGCGTGCCCGCGCCCAGCCCCGCGGCCTCTGCGCGCCCGGCCAGCAG
CTCCACGCCGCGCCTGGGACCCGCACCCACCGCCCGGACCGCCGCGCCCAGTCCGGACCGCAGGGACTCA
GCCTCGCCGGGCGCTGCCAGTGGCCTCGACCCACTGGACTCTGCGCGCTCGCGCCTCTCTTCCAACTTGT
GA

Translation (863 aa):
MDARGGGGRPGDSPGTTPAPGPPPPPPPPAPPQPQPPPAPPPNPTTPSHPESADEPGPRARLCSRDSACT
PGAAKGGANGECGRGEPQCSPEGPARGPKVSFSCRGAASGPSAAEEAGSEEAGPAGEPRGSQASFLQRQF
GALLQPGVNKFSLRMFGSQKAVEREQERVKSAGAWIIHPYSDFRFYWDFTMLLFMVGNLIIIPVGITFFK
DETTAPWIVFNVVSDTFFLMDLVLNFRTGIVIEDNTEIILDPEKIKKKYLRTWFVVDFVSSIPVDYIFLI
VEKGIDSEVYKTARALRIVRFTKILSLLRLLRLSRLIRYIHQWEEIFHMTYDLASAVMRICNLISMMLLL
CHWDGCLQFLVPMLQDFPSDCWVSINNMVNHSWSELYSFALFKAMSHMLCIGYGRQAPESMTDIWLTMLS
MIVGATCYAMFIGHATALIQSLDSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQGKMFDEDS
ILGELNGPLREEIVNFNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHG
VVSVLTKGNKEMKLSDGSYFGEICLLTRGRRTASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAFETVAI
DRLDRIGKKNSILLHKVQHDLSSGVFNNQENAIIQEIVKYDREMVQQAELGQRVGLFPPPPPPQVTSAIA
TLQQAVAMSFCPQVARPLVGPLALGSPRLVRRAPPGPLPPAASPGPPAASPPAAPSSPRAPRTSPYGVPG
SPATRVGPALPARRLSRASRPLSASQPSLPHGVPAPSPAASARPASSSTPRLGPAPTARTAAPSPDRRDS
ASPGAASGLDPLDSARSRLSSNL


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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