NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS40170.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40170.1 Public Mus musculus 7 Nkx6-2 23 108 98 CCDS HistoryNCBI Gene:14912Re-query CCDS DB by CCDS ID:40170.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40170.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000097974.8 ENSMUSP00000095588.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000097974.8Link to Ensembl Protein Viewer:ENSMUSP00000095588.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000097974Re-query CCDS DB by Protein ID:ENSMUSP00000095588
Original member Current member EBI ENSMUST00000106095.2 ENSMUSP00000101701.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106095.2Link to Ensembl Protein Viewer:ENSMUSP00000101701.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000106095Re-query CCDS DB by Protein ID:ENSMUSP00000101701
Original member NCBI NM_183248.3 NP_899071.2 Updated not alive Link to Nucleotide Sequence:NM_183248.3Link to Protein Sequence:NP_899071.2Re-query CCDS DB by Nucleotide ID:NM_183248Re-query CCDS DB by Protein ID:NP_899071
Current member NCBI NM_183248.4 NP_899071.2 Accepted alive Link to Nucleotide Sequence:NM_183248.4Link to Protein Sequence:NP_899071.2Re-query CCDS DB by Nucleotide ID:NM_183248Re-query CCDS DB by Protein ID:NP_899071Link to BLAST:NP_899071.2

Chromosomal Locations for CCDS 40170.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 139581434 139581688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 139581881 139582053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 139582134 139582539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (834 nt):
ATGGACGCTAACCGCCCGGGTGCGTTTGTGCTGAGCAGCGCGCCTTTAGCCGCGCTGCACAACATGGCTG
AGATGAAGACGTCGCTGTTCCCCTACGCGCTGCAGGGCCCGGCGGGCTTCAAGACACCCGCCCTAGGCAG
CCTTGGCGCGCAGTTGCCTCTAGGCACTCCGCACGGCATCAGCGACATCCTGGGACGGCCGGTGGGCGCA
GCGGGTGGCGGCCTCCTAGGAAGTCTGCCCCGTCTCAACGGGCTCGCCTCGTCTGCAGGTGTCTACTTCG
GGCCCGCAGCCGCCGTGGCTCGGGGCTACCCCAAGCCGCTGGCGGAACTGCCTGGGCGCCCGCCCATCTT
CTGGCCTGGGGTGGTGCAGGGCTCTCCCTGGAGGGACCCGCGACTGGCCGGCTCCGCCCAAGCCGGCGGG
GTCCTGGATAAGGATGGCAAGAAGAAACACTCGCGGCCGACTTTCTCCGGCCAGCAGATCTTCGCGCTGG
AGAAGACTTTCGAGCAGACCAAGTATTTGGCAGGCCCAGAGCGCGCGCGGCTTGCCTACTCTCTGGGCAT
GACCGAGAGCCAAGTGAAGGTGTGGTTCCAGAATCGGCGGACCAAGTGGCGCAAGCGGCACGCGGCAGAG
ATGGCGTCGGCTAAAAAGAAGCAAGACTCGGATGCCGAGAAGCTGAAGGTGGGTGGCTCAGACGCGGAGG
ACGATGACGAATACAACCGGCCCCTGGACCCCAACTCCGATGACGAGAAGATCACGCGGCTTCTCAAAAA
GCACAAACCCTCGAACTTGGCGCTCGTTAGCCCGTGTGGTGGCAGCGCGGGGGACGCCTTGTGA

Translation (277 aa):
MDANRPGAFVLSSAPLAALHNMAEMKTSLFPYALQGPAGFKTPALGSLGAQLPLGTPHGISDILGRPVGA
AGGGLLGSLPRLNGLASSAGVYFGPAAAVARGYPKPLAELPGRPPIFWPGVVQGSPWRDPRLAGSAQAGG
VLDKDGKKKHSRPTFSGQQIFALEKTFEQTKYLAGPERARLAYSLGMTESQVKVWFQNRRTKWRKRHAAE
MASAKKKQDSDAEKLKVGGSDAEDDDEYNRPLDPNSDDEKITRLLKKHKPSNLALVSPCGGSAGDAL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH