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Report for CCDS17746.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17746.1 Public Mus musculus 3 Gstm2 23 108 98 CCDS HistoryNCBI Gene:14863Re-query CCDS DB by CCDS ID:17746.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17746.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000012348.8 ENSMUSP00000012348.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000012348.8Link to Ensembl Protein Viewer:ENSMUSP00000012348.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000012348Re-query CCDS DB by Protein ID:ENSMUSP00000012348
Original member Current member NCBI NM_008183.4 NP_032209.1 Accepted alive Link to Nucleotide Sequence:NM_008183.4Link to Protein Sequence:NP_032209.1Re-query CCDS DB by Nucleotide ID:NM_008183Re-query CCDS DB by Protein ID:NP_032209Link to BLAST:NP_032209.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032209.1 218 P15626 218 100% 0 0

Chromosomal Locations for CCDS 17746.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 107982049 107982138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 107983936 107984046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 107984129 107984224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 107985049 107985149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 107985247 107985328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 107985618 107985682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 107986034 107986109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 107986358 107986393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (657 nt):
ATGCCTATGACACTAGGTTACTGGGACATCCGTGGGCTGGCTCACGCCATCCGCCTGCTCCTGGAATACA
CAGACACAAGCTATGAGGACAAGAAATACACCATGGGGGACGCTCCTGACTATGACCGAAGCCAGTGGCT
GAGTGAGAAGTTCAAGCTGGGCCTGGACTTTCCCAATCTGCCCTACTTGATTGATGGATCACACAAGATC
ACCCAGAGCAATGCCATCCTGCGCTACCTTGCCCGAAAGCACAACCTGTGTGGAGAGACAGAGGAGGAGA
GGATTCGTGTGGACATTTTGGAGAACCAGGCTATGGACACCCGCATACAGTTGGCCATGGTTTGCTACAG
CCCTGACTTTGAGAAAAAGAAGCCAGAGTACTTAGAGGGTCTCCCTGAGAAGATGAAGCTCTACTCTGAG
TTTCTGGGCAAGCAGCCATGGTTTGCAGGGAACAAGGTCACCTATGTGGATTTTCTTGTTTATGATGTCC
TTGATCAACACCGAATATTTGAGCCCAAGTGCCTGGATGCCTTCCCAAACCTGAAGGACTTCATGGGTCG
CTTTGAGGGCCTGAAGAAGATATCTGACTACATGAAGAGCAGCCGCTTCCTCTCCAAGCCAATCTTTGCA
AAGATGGCCTTTTGGAACCCAAAGTAG

Translation (218 aa):
MPMTLGYWDIRGLAHAIRLLLEYTDTSYEDKKYTMGDAPDYDRSQWLSEKFKLGLDFPNLPYLIDGSHKI
TQSNAILRYLARKHNLCGETEEERIRVDILENQAMDTRIQLAMVCYSPDFEKKKPEYLEGLPEKMKLYSE
FLGKQPWFAGNKVTYVDFLVYDVLDQHRIFEPKCLDAFPNLKDFMGRFEGLKKISDYMKSSRFLSKPIFA
KMAFWNPK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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