NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS15025.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15025.1 Public Mus musculus 1 Lancl1 23 108 98 CCDS HistoryNCBI Gene:14768Re-query CCDS DB by CCDS ID:15025.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15025.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027149.11 ENSMUSP00000027149.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027149.11Link to Ensembl Protein Viewer:ENSMUSP00000027149.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000027149Re-query CCDS DB by Protein ID:ENSMUSP00000027149
Original member Current member EBI ENSMUST00000113979.9 ENSMUSP00000109612.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113979.9Link to Ensembl Protein Viewer:ENSMUSP00000109612.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000113979Re-query CCDS DB by Protein ID:ENSMUSP00000109612
Original member Current member EBI ENSMUST00000119559.7 ENSMUSP00000113080.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000119559.7Link to Ensembl Protein Viewer:ENSMUSP00000113080.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000119559Re-query CCDS DB by Protein ID:ENSMUSP00000113080
Original member Current member NCBI NM_001190984.1 NP_001177913.1 Accepted alive Link to Nucleotide Sequence:NM_001190984.1Link to Protein Sequence:NP_001177913.1Re-query CCDS DB by Nucleotide ID:NM_001190984Re-query CCDS DB by Protein ID:NP_001177913Link to BLAST:NP_001177913.1
Original member Current member NCBI NM_001190985.1 NP_001177914.1 Accepted alive Link to Nucleotide Sequence:NM_001190985.1Link to Protein Sequence:NP_001177914.1Re-query CCDS DB by Nucleotide ID:NM_001190985Re-query CCDS DB by Protein ID:NP_001177914Link to BLAST:NP_001177914.1
Original member Current member NCBI NM_021295.3 NP_067270.1 Accepted alive Link to Nucleotide Sequence:NM_021295.3Link to Protein Sequence:NP_067270.1Re-query CCDS DB by Nucleotide ID:NM_021295Re-query CCDS DB by Protein ID:NP_067270Link to BLAST:NP_067270.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001177913.1 399 O89112 399 100% 0 0
NP_001177914.1 399 O89112 399 100% 0 0
NP_067270.1 399 O89112 399 100% 0 0

Chromosomal Locations for CCDS 15025.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 67003481 67003557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 67004339 67004411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 67004790 67004966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 67006868 67007050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 67009228 67009374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 67009911 67010046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 67020858 67021065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 67034124 67034241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 67038495 67038575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1200 nt):
ATGGCTCAGAGGGCCTTTCCGAATCCTTATGCCGATTATAACAAGTCGCTGGCCGAAAACTACTTTGATT
CTACTGGGAGGCTGACTCCTGAGTTCTCACATCGCTTGACCAATAAGATCCGAGAGCTCCTTCAGCAAAT
GGAGAGAGGCCTAAAGTCTGCAGACCCTCGGGATGGCACTGGGTACACTGGCTGGGCAGGCATCGCTGTG
CTTTACCTCCACCTCCACAATGTGTTTGGGGACCCAGCCTATCTACAGATGGCGCACAGCTATGTAAAGC
AAAGCCTCAACTGTCTGAGCAGGCGTTCCATCACCTTCCTGTGTGGCGATGCGGGCCCCCTGGCTGTGGC
TGCTGTGCTGTACCACAAGATGAACAGTGAGAAGCAGGCCGAGGAGTGCATCACACGGCTCATTCACCTA
AATAAGATTGATCCCCACGTACCAAATGAAATGCTCTATGGCCGCATAGGCTACATCTTTGCTCTGCTTT
TTGTCAATAAGAACTTTGGAGAGGAGAAGATTCCTCAGAGCCATATTCAGCAGATTTGTGAAAACATCTT
AACCTCTGGGGAAAACCTATCTAGAAAGAGAAACTTGGCGGCAAAGTCTCCACTGATGTATGAGTGGTAC
CAGGAATATTACGTGGGGGCTGCTCATGGCTTGGCAGGCATTTATTACTACCTGATGCAGCCCAGCCTTC
AGGTGAACCAAGGAAAGTTGCATAGTTTGGTGAAGCCCAGTGTAGACTTTGTCTGCCGGCTGAAGTTTCC
TTCCGGCAATTACCCTCCATGTTTGGATGATACCAGAGACCTGCTTGTCCATTGGTGCCACGGTGCTCCT
GGGGTCATCTATATGCTCATCCAAGCATACAAGGTGTTCAAAGAAGAGCGTTACCTGTGTGATGCCCAGC
AGTGTGCTGACGTGATCTGGCAGTACGGGCTACTGAAGAAGGGCTACGGGCTGTGCCATGGTGCTGCAGG
GAATGCCTACGCTTTCCTGGCACTCTACAACCTCACACAGGATCTGAAGTATCTGTACAGGGCCTGCAAG
TTTGCTGAGTGGTGCTTAGACTACGGGGAGCACGGATGCAGGACAGCGGACACCCCCTTCTCCCTCTTTG
AAGGGATGGCTGGAACAATATATTTCTTGGCTGACCTGTTAGTCCCCACAAAGGCCAAGTTCCCTGCATT
TGAACTCTGA

Translation (399 aa):
MAQRAFPNPYADYNKSLAENYFDSTGRLTPEFSHRLTNKIRELLQQMERGLKSADPRDGTGYTGWAGIAV
LYLHLHNVFGDPAYLQMAHSYVKQSLNCLSRRSITFLCGDAGPLAVAAVLYHKMNSEKQAEECITRLIHL
NKIDPHVPNEMLYGRIGYIFALLFVNKNFGEEKIPQSHIQQICENILTSGENLSRKRNLAAKSPLMYEWY
QEYYVGAAHGLAGIYYYLMQPSLQVNQGKLHSLVKPSVDFVCRLKFPSGNYPPCLDDTRDLLVHWCHGAP
GVIYMLIQAYKVFKEERYLCDAQQCADVIWQYGLLKKGYGLCHGAAGNAYAFLALYNLTQDLKYLYRACK
FAEWCLDYGEHGCRTADTPFSLFEGMAGTIYFLADLLVPTKAKFPAFEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH