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Report for CCDS28100.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28100.1 Public Mus musculus 16 Gp5 23 108 98 CCDS HistoryNCBI Gene:14729Re-query CCDS DB by CCDS ID:28100.1See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28100.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000061190.7 ENSMUSP00000051895.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000061190.7Link to Ensembl Protein Viewer:ENSMUSP00000051895.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000061190Re-query CCDS DB by Protein ID:ENSMUSP00000051895
Original member Current member NCBI NM_008148.4 NP_032174.2 Accepted alive Link to Nucleotide Sequence:NM_008148.4Link to Protein Sequence:NP_032174.2Re-query CCDS DB by Nucleotide ID:NM_008148Re-query CCDS DB by Protein ID:NP_032174Link to BLAST:NP_032174.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032174.2 567 O08742 567 99.2945% 0 4

Chromosomal Locations for CCDS 28100.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 30308151 30309854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1704 nt):
ATGCTAAGAAGCGCCCTGCTGTCCGCGGTGCTCGCACTCTTGCGTGCCCAACCTTTTCCCTGCCCCAAAA
CCTGCAAGTGTGTGGTCCGCGATGCCGCGCAGTGCTCGGGCGGCAGCGTGGCTCACATCGCTGAGCTAGG
TCTGCCTACGAACCTCACACACATCCTGCTCTTCCGAATGGACCAGGGCATATTGCGGAACCACAGCTTC
AGCGGCATGACAGTCCTTCAGCGCCTGATGCTCTCAGATAGCCACATTTCCGCCATCGACCCCGGCACCT
TCAATGACCTGGTAAAACTGAAAACCCTCAGGTTGACGCGCAACAAAATCTCTCGTCTTCCACGTGCGAT
CCTGGATAAGATGGTACTCTTGGAACAGCTGTTCTTGGACCACAATGCACTAAGGGACCTTGATCAAAAC
CTGTTTCAGCAACTGCGTAACCTTCAGGAGCTCGGTTTGAACCAGAATCAGCTCTCTTTTCTTCCTGCTA
ACCTTTTCTCGAGCCTGAGAGAACTGAAGTTGTTGGATTTATCGCGAAACAACCTGACCCACCTGCCCAA
GGGACTGCTTGGGGCTCAAGTTAAGCTTGAGAAACTGCTGCTCTATTCAAACCAGCTCACGTCTGTGGAT
TCGGGGCTGCTGAGCAACCTGGGCGCCCTGACTGAGCTGCGGCTGGAGCGGAATCACCTCCGCTCCGTAG
CCCCGGGTGCCTTCGACCGCCTCGGAAACCTGAGCTCCTTGACTCTATCCGGAAACCTCCTGGAGTCTCT
GCCGCCCGCGCTCTTCCTTCACGTGAGCAGCGTGTCTCGGCTGACTCTGTTCGAGAACCCCCTGGAGGAG
CTCCCGGACGTGTTGTTCGGGGAGATGGCCGGCCTGCGGGAGCTGTGGCTGAACGGCACCCACCTGAGCA
CGCTGCCCGCCGCTGCCTTCCGCAACCTGAGCGGCTTGCAGACGCTGGGGCTGACGCGGAACCCGCGCCT
GAGCGCGCTCCCGCGCGGCGTGTTCCAGGGCCTACGGGAGCTGCGCGTGCTCGCGCTGCACACCAACGCC
CTGGCGGAGCTGCGGGACGACGCGCTGCGCGGCCTCGGGCACCTGCGCCAGGTGTCGCTGCGCCACAACC
GGCTGCGGGCCCTGCCCCGCACGCTCTTCCGCAACCTCAGCAGCCTCGAGAGCGTGCAGCTAGAGCACAA
CCAGCTGGAGACGCTGCCAGGAGACGTGTTCGCGGCTCTGCCCCAGCTGACCCAGGTCCTGCTGGGTCAC
AACCCCTGGCTCTGCGACTGTGGCCTGTGGCCCTTCCTCCAGTGGCTGCGGCATCACCCGGACATCCTGG
GCCGAGACGAGCCCCCGCAGTGCCGTGGCCCGGAGCCACGCGCCAGCCTGTCGTTCTGGGAGCTGCTGCA
GGGTGACCCGTGGTGCCCGGATCCTCGCAGCCTGCCTCTCGACCCTCCAACCGAAAATGCTCTGGAAGCC
CCGGTTCCGTCCTGGCTGCCTAACAGCTGGCAGTCCCAGACGTGGGCCCAGCTGGTGGCCAGGGGTGAAA
GTCCCAATAACAGGCTCTACTGGGGTCTTTATATTCTGCTTCTAGTAGCCCAGGCCATCATAGCCGCGTT
CATCGTGTTTGCCATGATTAAAATCGGCCAGCTGTTTCGAACATTAATCAGAGAGAAGCTCTTGTTAGAG
GCAATGGGAAAATCGTGTAACTAA

Translation (567 aa):
MLRSALLSAVLALLRAQPFPCPKTCKCVVRDAAQCSGGSVAHIAELGLPTNLTHILLFRMDQGILRNHSF
SGMTVLQRLMLSDSHISAIDPGTFNDLVKLKTLRLTRNKISRLPRAILDKMVLLEQLFLDHNALRDLDQN
LFQQLRNLQELGLNQNQLSFLPANLFSSLRELKLLDLSRNNLTHLPKGLLGAQVKLEKLLLYSNQLTSVD
SGLLSNLGALTELRLERNHLRSVAPGAFDRLGNLSSLTLSGNLLESLPPALFLHVSSVSRLTLFENPLEE
LPDVLFGEMAGLRELWLNGTHLSTLPAAAFRNLSGLQTLGLTRNPRLSALPRGVFQGLRELRVLALHTNA
LAELRDDALRGLGHLRQVSLRHNRLRALPRTLFRNLSSLESVQLEHNQLETLPGDVFAALPQLTQVLLGH
NPWLCDCGLWPFLQWLRHHPDILGRDEPPQCRGPEPRASLSFWELLQGDPWCPDPRSLPLDPPTENALEA
PVPSWLPNSWQSQTWAQLVARGESPNNRLYWGLYILLLVAQAIIAAFIVFAMIKIGQLFRTLIREKLLLE
AMGKSCN


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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