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Report for CCDS23814.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23814.1 Public Mus musculus 10 Ostm1 23 108 98 CCDS HistoryNCBI Gene:14628Re-query CCDS DB by CCDS ID:23814.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23814.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000040718.5 ENSMUSP00000035516.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000040718.5Link to Ensembl Protein Viewer:ENSMUSP00000035516.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000040718Re-query CCDS DB by Protein ID:ENSMUSP00000035516
Original member Current member NCBI NM_172416.3 NP_766004.1 Accepted alive Link to Nucleotide Sequence:NM_172416.3Link to Protein Sequence:NP_766004.1Re-query CCDS DB by Nucleotide ID:NM_172416Re-query CCDS DB by Protein ID:NP_766004Link to BLAST:NP_766004.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766004.1 338 Q8BGT0 338 100% 0 0

Chromosomal Locations for CCDS 23814.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 42678984 42679397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 42683160 42683274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 42692911 42693008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 42696250 42696417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 42698108 42698273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 42700483 42700538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1017 nt):
ATGGCTCGGGACGCGGAGCTGGCGCGCAGTAGCGGGTGGCCGTGGCGGTGGCTGCCGGCGCTGCTGCTGC
TGCAGCTGCTGCGGTGGAGGTGCGCCCTGTGCGCGCTCCCCTTCACCAGCAGTCGGCACCCAGGCTTTGC
GGACCTGCTGTCGGAGCAGCAGCTGTTGGAGGTGCAGGACTTGACCCTGTCTTTGCTGCAGGGCGGAGGT
CTAGGGCCGCTGTCACTGCTACCTCCGGACCTGCCGGATCTGGAGCCTGAGTGCCGGGAGCTGCTGATGG
ACTTCGCCAATAGCAGCGCCGAGCTGACCGCCTGTATGGTGCGCAGCGCTCGGCCCGTGCGCCTCTGCCA
GACCTGCTACCCGCTCTTCCAACAGGTCGCAATCAAGATGGACAACATCAGCCGAAACATCGGGAATACC
TCCGAGGGCCCGCGCTGTGGCGGAAGTCTCCTGACGGCAGACAGAATGCAGATAGTTCTCATGGTCTCTG
AGTTTTTCAACAGCACGTGGCAGGAGGCGAACTGCGCAAATTGCCTAACAAACAATGGTGAGGATTTGTC
AAACAACACAGAGGACTTCCTCAGTCTGTTTAACAAGACTTTGGCCTGCTTTGAGCATAACCTGCAGGGG
CACACATACAGTCTCCTCCCACCAAAAAATTACTCCGAAGTGTGCAGAAACTGTAAAGAGGCATATAAAA
ACCTGAGCCTCCTGTACAGTCAAATGCAGAAACTGAACGGGCTTGAGAACAAGGCTGAGCCTGAGACGCA
CTTGTGCATCGATGTGGAGGATGCAATGAACATTACTCGGAAGCTTTGGAGTCGAACCTTCAACTGTTCG
GTCACCTGCAGCGACACGGTGTCCGTGGTTGCTGTGTCTGTGTTCATTCTCTTCCTGCCTGTCGTCTTCT
ACCTCAGTAGCTTCCTTCACTCAGAGCAAAAGAAACGCAAACTCATTCTACCCAAACGTCTCAAGTCGAG
CACCAGTTTTGCCAACATTCAAGAAAATGCCACCTGA

Translation (338 aa):
MARDAELARSSGWPWRWLPALLLLQLLRWRCALCALPFTSSRHPGFADLLSEQQLLEVQDLTLSLLQGGG
LGPLSLLPPDLPDLEPECRELLMDFANSSAELTACMVRSARPVRLCQTCYPLFQQVAIKMDNISRNIGNT
SEGPRCGGSLLTADRMQIVLMVSEFFNSTWQEANCANCLTNNGEDLSNNTEDFLSLFNKTLACFEHNLQG
HTYSLLPPKNYSEVCRNCKEAYKNLSLLYSQMQKLNGLENKAEPETHLCIDVEDAMNITRKLWSRTFNCS
VTCSDTVSVVAVSVFILFLPVVFYLSSFLHSEQKKRKLILPKRLKSSTSFANIQENAT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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