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Report for CCDS23927.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23927.1 Public Mus musculus 10 Ggt1 23 108 98 CCDS HistoryNCBI Gene:14598Re-query CCDS DB by CCDS ID:23927.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23927.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000006508.9 ENSMUSP00000006508.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000006508.9Link to Ensembl Protein Viewer:ENSMUSP00000006508.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000006508Re-query CCDS DB by Protein ID:ENSMUSP00000006508
Original member Current member EBI ENSMUST00000134503.7 ENSMUSP00000121312.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000134503.7Link to Ensembl Protein Viewer:ENSMUSP00000121312.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000134503Re-query CCDS DB by Protein ID:ENSMUSP00000121312
Original member NCBI NM_001305992.1 NP_001292921.1 Updated not alive Link to Nucleotide Sequence:NM_001305992.1Link to Protein Sequence:NP_001292921.1Re-query CCDS DB by Nucleotide ID:NM_001305992Re-query CCDS DB by Protein ID:NP_001292921
Current member NCBI NM_001305992.2 NP_001292921.1 Accepted alive Link to Nucleotide Sequence:NM_001305992.2Link to Protein Sequence:NP_001292921.1Re-query CCDS DB by Nucleotide ID:NM_001305992Re-query CCDS DB by Protein ID:NP_001292921Link to BLAST:NP_001292921.1
Original member NCBI NM_008116.3 NP_032142.1 Updated not alive Link to Nucleotide Sequence:NM_008116.3Link to Protein Sequence:NP_032142.1Re-query CCDS DB by Nucleotide ID:NM_008116Re-query CCDS DB by Protein ID:NP_032142
Current member NCBI NM_008116.4 NP_032142.1 Accepted alive Link to Nucleotide Sequence:NM_008116.4Link to Protein Sequence:NP_032142.1Re-query CCDS DB by Nucleotide ID:NM_008116Re-query CCDS DB by Protein ID:NP_032142Link to BLAST:NP_032142.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001292921.1 568 Q60928 568 100% 0 0
NP_032142.1 568 Q60928 568 100% 0 0

Chromosomal Locations for CCDS 23927.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 75574236 75574396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75575950 75576080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75576216 75576302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75578729 75578921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75579226 75579383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75580504 75580653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75581297 75581433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75584820 75585007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75585158 75585285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75585387 75585499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75585591 75585704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75585881 75586027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1707 nt):
ATGAAGAATCGGTTTCTGGTGCTGGGCCTGGTGGCTGTGGTTCTGGTATTTGTCATCATCGGCCTCTGTA
TCTGGTTGCCCTACACCTCTGGGAAGCCCGACCACGTGTACTCCAGGGCGGCGGTGGCCACCGACGCCAA
GCGCTGCTCAGAGATTGGACGGGATATCCTACAGGAAGGTGGTTCCGTGGTGGATGCAGCCATCGCAAGC
CTGCTGTGTATGGGGCTCATGAATGCCCACAGTATGGGCATCGGGGGCGGCCTGTTCTTCACCATCTACA
ACAGCACCACAGGAAAAGTTGAGGTTATCAATGCCCGTGAGGTAGCTCCCAGGTTGGCCAATACCACCAT
GTTCAACAACTCCAAGGACTCTGAAGAAGGTGGCCTTTCAGTGGCTGTCCCTGGTGAAATCCGTGGTTAT
GAGCTGGCACACCAACGACACGGCCGGCTCCCCTGGGCTCGCCTCTTCCAACCCAGCATCCAGCTGGCTC
GCCACGGCTTCCCTGTGGGCAAGGGTTTGGCAATAGCCCTGGACAAAAAACGGGACGTCATTGAGAAGAC
CCCTGCCTTGTGCGAGGTGTTCTGCCGCCAAGGGAAGGTGCTTCAAGAAGGAGAGACGGTGACTATGCCG
AAGCTGGCTGACACATTGCAGATACTGGCCCAGGAGGGCGCCAAGGCCTTCTACAATGGGAGCCTCACAG
CCCAGATTGTGAAAGACATCCAGGAGGCTGGTGGCATTATGACGGTTGAGGACCTCAACAACTACCGTGC
TGAGCTGATTGAGCATCCGATGAGCATCGGCCTCGGTGATGCGACCCTGTACGTGCCCAGTGCCCCACTC
AGCGGGCCCGTGCTGATTCTCATCTTGAACATCCTCAAAGGATACAACTTCTCTCCGAAGAGCGTAGCGA
CCCCTGAACAGAAGGCACTGACGTATCACCGTATCGTGGAGGCCTTTCGGTTTGCCTATGCCAAGAGGAC
CATGCTCGGTGACCCAAAGTTTGTCGATGTGTCTCAGGTGATCCGCAACATGAGCTCTGAGTTCTACGCC
ACCCAGCTCCGAGCCCGCATCACTGATGAAACCACCCACCCAGCCGCCTACTATGAGCCTGAATTCTACC
TTCAGGATGATGGAGGCACCGCTCACCTGTCTGCGGTTTCAGAGGATGGCAGTGCTGTGGCTGCCACTAG
TACCATCAACCTCTACTTTGGCTCCAAGGTCCTGTCTCGGGTCAGTGGCATCCTGTTTAATGATGAGATG
GATGACTTCAGCTCGCCCAACTTCATCAACCAGTTCAGGGTAGCCCCCTCACCAGCCAACTTCATCAAGC
CAGGTAAGCAGCCTCTTTCATCCATGTGTCCCTCAATCATCCTGGATAAGGACGGCCAGGTTCGCATGGT
GGTCGGAGCCTCAGGGGGTACCCAGATCACCACATCTGTTGCACTGGCCATCATCAACAGCCTGTGGTTC
GGATACGATGTGAAGAGAGCTGTGGAGGAGCCCCGGCTGCACAACCAGCTTTTACCTAATACCACAACGG
TAGAGAAAGACATTGATCAGGTGGTGACTGCAGGCCTGAAGATTCGGCACCACCATACAGAAGTCACGCC
CACCTTCATCGCTGTAGTTCAGGCTGTCGTTCGAGCATCAGGTGGTTGGGCAGCTGCCTCAGACTCCAGA
AAAGGCGGGGAACCTGCTGGCTACTGA

Translation (568 aa):
MKNRFLVLGLVAVVLVFVIIGLCIWLPYTSGKPDHVYSRAAVATDAKRCSEIGRDILQEGGSVVDAAIAS
LLCMGLMNAHSMGIGGGLFFTIYNSTTGKVEVINAREVAPRLANTTMFNNSKDSEEGGLSVAVPGEIRGY
ELAHQRHGRLPWARLFQPSIQLARHGFPVGKGLAIALDKKRDVIEKTPALCEVFCRQGKVLQEGETVTMP
KLADTLQILAQEGAKAFYNGSLTAQIVKDIQEAGGIMTVEDLNNYRAELIEHPMSIGLGDATLYVPSAPL
SGPVLILILNILKGYNFSPKSVATPEQKALTYHRIVEAFRFAYAKRTMLGDPKFVDVSQVIRNMSSEFYA
TQLRARITDETTHPAAYYEPEFYLQDDGGTAHLSAVSEDGSAVAATSTINLYFGSKVLSRVSGILFNDEM
DDFSSPNFINQFRVAPSPANFIKPGKQPLSSMCPSIILDKDGQVRMVVGASGGTQITTSVALAIINSLWF
GYDVKRAVEEPRLHNQLLPNTTTVEKDIDQVVTAGLKIRHHHTEVTPTFIAVVQAVVRASGGWAAASDSR
KGGEPAGY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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