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Report for CCDS24622.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24622.1 Public Mus musculus 11 Gfpt2 23 108 98 CCDS HistoryNCBI Gene:14584Re-query CCDS DB by CCDS ID:24622.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24622.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020629.4 ENSMUSP00000020629.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020629.4Link to Ensembl Protein Viewer:ENSMUSP00000020629.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000020629Re-query CCDS DB by Protein ID:ENSMUSP00000020629
Original member Current member NCBI NM_013529.3 NP_038557.1 Accepted alive Link to Nucleotide Sequence:NM_013529.3Link to Protein Sequence:NP_038557.1Re-query CCDS DB by Nucleotide ID:NM_013529Re-query CCDS DB by Protein ID:NP_038557Link to BLAST:NP_038557.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038557.1 682 Q9Z2Z9 682 100% 0 0

Chromosomal Locations for CCDS 24622.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 49794237 49794243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 49804952 49805059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 49807695 49807793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 49809034 49809159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 49810964 49811022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 49811670 49811804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 49815280 49815341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 49818580 49818659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 49819137 49819254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 49823212 49823375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 49823734 49823829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 49823941 49824038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 49824332 49824452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 49826744 49826901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 49827131 49827245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 49829740 49829867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 49832861 49833028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 49835612 49835773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 49837721 49837765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2049 nt):
ATGTGCGGAATCTTTGCCTACATGAATTACAGAGTTCCCAAGACAAGGAAAGAGATTTTCGAAACCCTTA
TCAGGGGTCTGCAGCGGCTGGAGTACCGGGGCTATGACTCTGCGGGGGTTGCCATTGATGGGAATAACCA
CGAAGTCAAAGAAAGACACATCCATCTTGTGAAGAAAAGGGGGAAAGTAAAGGCTCTGGATGAAGAACTT
TACAAGCAAGATAGCATGGACTTGAAGGTGGAGTTTGAGACACACTTCGGCATTGCCCACACACGTTGGG
CCACCCACGGGGTTCCCAATGCTGTCAACAGTCACCCGCAGCGTTCGGACAAAGACAATGAATTTGTTGT
CATCCACAACGGGATCATCACTAATTACAAGGATCTAAGGAAGTTTCTGGAAAGCAAAGGCTACGAGTTT
GAGTCAGAAACAGACACGGAGACCATCGCCAAGCTGATTAAATATGTATTTGACAACAGAGAGACTGAGG
ACATAACGTTTTCCACATTGGTCGAAAGAGTCATTCAGCAGTTGGAAGGCGCCTTTGCACTGGTTTTCAA
GAGTATTCACTACCCGGGAGAAGCTGTCGCCACGAGGAGAGGCAGCCCCTTGCTCATCGGGGTACGAAGC
AAATACAAACTCTCCACAGAGCAGATCCCCGTCTTATATCCGACATGCAATATCGAGAATGTGAAGAATA
TCTGCAAGACTAGGATGAAGAGACTGGACAGCTCCACCTGCCTGCACGCTGTGGGCGATAAAGCTGTGGA
ATTCTTCTTTGCTTCTGATGCAAGTGCCATCATAGAACACACCAACCGGGTCATCTTCTTAGAAGATGAT
GATATCGCTGCAGTGGCTGATGGGAAACTCTCCATTCACCGAGTCAAGCGCTCAGCTACTGATGACCCCT
CCCGAGCCATCCAGACCTTGCAGATGGAACTGCAGCAAATAATGAAAGGTAACTTCAGCGCATTTATGCA
GAAGGAGATCTTCGAGCAGCCAGAATCAGTTTTTAATACCATGAGAGGTCGGGTGAATTTTGAGACCAAC
ACAGTGCTCCTGGGTGGCTTGAAGGACCATTTGAAAGAGATCCGACGATGCCGAAGGCTCATTGTGATTG
GCTGTGGAACCAGCTACCATGCCGCTGTGGCTACACGGCAAGTCTTAGAGGAACTGACCGAGCTGCCTGT
GATGGTTGAACTTGCCAGTGACTTTCTGGACAGGAACACACCTGTGTTCAGGGATGACGTTTGCTTTTTC
ATAAGCCAATCAGGTGAGACTGCAGACACGCTCCTGGCGCTGCGATACTGTAAGGATCGAGGTGCGCTGA
CCGTGGGCATCACCAACACCGTGGGTAGCTCCATCTCCCGGGAGACTGACTGTGGCGTCCACATCAACGC
AGGGCCCGAGATTGGGGTGGCCAGCACCAAGGCGTACACCAGCCAGTTCATCTCTCTGGTGATGTTTGGT
TTGATGATGTCTGAAGATCGAATTTCTCTACAGAACAGGAGACAAGAGATCATCCGTGGCCTCAGATCTT
TACCGGAGCTGATCAAAGAAGTGCTGTCCCTGGATGAGAAGATCCATGACTTGGCCCTGGAGCTCTACAC
ACAAAGGTCTCTCCTCGTGATGGGACGGGGATATAACTATGCCACATGTCTGGAAGGTGCCTTGAAAATT
AAGGAGATAACCTACATGCATTCAGAAGGTATCCTAGCCGGAGAGCTGAAGCACGGGCCCCTTGCTCTCG
TCGACAAGCAGATGCCAGTCATCATGGTCATCATGAAGGATCCTTGCTTTGCCAAGTGCCAGAATGCCCT
GCAGCAGGTCACTGCCCGCCAGGGTCGCCCAATCATACTGTGTTCCAAGGATGACACCGAGAGCTCCAAG
TTTGCATATAAAACCATTGAACTTCCCCACACAGTGGACTGTCTCCAGGGTATCCTGAGCGTGATTCCAC
TCCAGCTTCTGTCCTTCCACCTGGCTGTCCTCCGAGGTTATGATGTTGACTTCCCCAGAAACCTAGCCAA
GTCTGTCACTGTGGAATGA

Translation (682 aa):
MCGIFAYMNYRVPKTRKEIFETLIRGLQRLEYRGYDSAGVAIDGNNHEVKERHIHLVKKRGKVKALDEEL
YKQDSMDLKVEFETHFGIAHTRWATHGVPNAVNSHPQRSDKDNEFVVIHNGIITNYKDLRKFLESKGYEF
ESETDTETIAKLIKYVFDNRETEDITFSTLVERVIQQLEGAFALVFKSIHYPGEAVATRRGSPLLIGVRS
KYKLSTEQIPVLYPTCNIENVKNICKTRMKRLDSSTCLHAVGDKAVEFFFASDASAIIEHTNRVIFLEDD
DIAAVADGKLSIHRVKRSATDDPSRAIQTLQMELQQIMKGNFSAFMQKEIFEQPESVFNTMRGRVNFETN
TVLLGGLKDHLKEIRRCRRLIVIGCGTSYHAAVATRQVLEELTELPVMVELASDFLDRNTPVFRDDVCFF
ISQSGETADTLLALRYCKDRGALTVGITNTVGSSISRETDCGVHINAGPEIGVASTKAYTSQFISLVMFG
LMMSEDRISLQNRRQEIIRGLRSLPELIKEVLSLDEKIHDLALELYTQRSLLVMGRGYNYATCLEGALKI
KEITYMHSEGILAGELKHGPLALVDKQMPVIMVIMKDPCFAKCQNALQQVTARQGRPIILCSKDDTESSK
FAYKTIELPHTVDCLQGILSVIPLQLLSFHLAVLRGYDVDFPRNLAKSVTVE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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