NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS17675.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17675.1 Public Mus musculus 3 Gdap2 23 108 98 CCDS HistoryNCBI Gene:14547Re-query CCDS DB by CCDS ID:17675.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17675.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029459.9 ENSMUSP00000029459.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029459.9Link to Ensembl Protein Viewer:ENSMUSP00000029459.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000029459Re-query CCDS DB by Protein ID:ENSMUSP00000029459
Original member NCBI NM_010269.3 NP_034399.1 Updated not alive Link to Nucleotide Sequence:NM_010269.3Link to Protein Sequence:NP_034399.1Re-query CCDS DB by Nucleotide ID:NM_010269Re-query CCDS DB by Protein ID:NP_034399
Current member NCBI NM_010269.4 NP_034399.1 Accepted alive Link to Nucleotide Sequence:NM_010269.4Link to Protein Sequence:NP_034399.1Re-query CCDS DB by Nucleotide ID:NM_010269Re-query CCDS DB by Protein ID:NP_034399Link to BLAST:NP_034399.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034399.1 498 Q9DBL2-1 498 100% 0 0

Chromosomal Locations for CCDS 17675.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 100170000 100170175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 100170898 100171037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 100177843 100177996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 100178234 100178322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 100182677 100182753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 100186570 100186729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 100187874 100188033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 100190886 100190962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 100191627 100191703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 100194490 100194629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 100196543 100196597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 100201974 100202117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 100205772 100205819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1497 nt):
ATGGATCCCTTGGGTGCACCTTCCCAGTTTGTGGATGTGGATACCCTGCTAAGCTGGGGCGACTCGTACG
AAGATGAAGTAGACTGCGCTGACAGTACTGCCGAGGCCTTCCAGGAAGACGCCAGCAGATCACCTTTTGT
TTATAGTCGGGACGTCAATGGAAAAGTGGTTCTTTGGAAAGGAGATGTGGCATTACTGAACTGCACAGCC
ATTGTGAATACCAGCAATGAAAGCCTCACAGATAAGAACCCTGTGTCAGAGAGCATCTTCATGCTTGCGG
GGCCAGATTTGAAGGAGGACCTTCAGAAACTCAAAGGTTGCCGAACTGGTGAAGCAAAATTGACGAAAGG
CTTTAACCTAGCTGCTCGGTTCATCATTCACACAGTGGGACCTAAGTACAAGAGCCGCTACCGCACTGCA
GCGGAGAGTTCCCTGTACAGCTGTTACAGAAACGTGCTTCAGCTGGCAAAAGAACAGTCCATGTCTTCTG
TTGGCTTCTGTGTCATCAATTCTGCCAAGCGAGGTTATCCACTAGAAGATGCAACACACATCGCTCTTCG
TACTGTGAGGCGGTTCCTAGAGATCCATGGGGAAAACATTGAAAAAGTAGTATTTGCTGTCTCAGAACTC
GAAGAGGCCACTTACCAAAAGCTGCTACCTCTGTACTTCCCAAGGTCATTAAAGGAGGAGATCCGGTCAT
TGCCGTACCTACCTGCAGACATTGGAAATGCAGAAGGGGAGCCCGTGGTGCCCGAGCGGCAAATTAGAAT
CAGTGAGAAACCCGGTGCCTCGGAGGACAATGAAGAGGAAGATGAGGATGAAGGCTTGGGAGTGGATCTG
TCTTTTATTGGCTCTCATGCTTTTGCTCGGATGGAAGGAGATATTGACAAGCAAAGAAAGTTGATCCTCC
AGGGACAGTTGTCTGAAGCCGCCCTGCAGAAGCAGCATCAAAGAAATTATAATCGCTGGTTATGCCAAGC
AAGATCTGAAGACCTGTCTGATATTGCTTCTCTGAAAGCTTTATACCAAACAGGGGTAGATAACTGTGGC
CGCACAGTGATGGTGGTAGTTGGAAGAAACATTCCTGTGACACTGATAGATATGGACAAGGCCCTCTTGT
ATTTTATCCATGTAATGGATCACATTGCTGTGAAGGAGTATGTGCTGGTGTATTTCCACACACTGACCAG
CGACTACAATCACCTGGACTCCGACTTCCTGAAGAAACTCTACGATGTGGTTGACATCAAATACAAGAGG
AATTTGAAGGCTGTTTATTTCGTTCATCCAACATTCCGTTCAAAGGTCTCAACATGGTTTTTCACCACCT
TTTCTGTCTCAGGACTGAAGGACAAGATCCACCACGTAGACAGCCTGCAGCAGCTCTTCTCTGCCATATC
ACCAGAGCAGATAGACTTTCCTCCTTTTGTCCTTGAATATGACGCGAGGGAAAATGGGCCTTATTTTGCA
TCTTATCCTCCATCACCAGATTTGTGA

Translation (498 aa):
MDPLGAPSQFVDVDTLLSWGDSYEDEVDCADSTAEAFQEDASRSPFVYSRDVNGKVVLWKGDVALLNCTA
IVNTSNESLTDKNPVSESIFMLAGPDLKEDLQKLKGCRTGEAKLTKGFNLAARFIIHTVGPKYKSRYRTA
AESSLYSCYRNVLQLAKEQSMSSVGFCVINSAKRGYPLEDATHIALRTVRRFLEIHGENIEKVVFAVSEL
EEATYQKLLPLYFPRSLKEEIRSLPYLPADIGNAEGEPVVPERQIRISEKPGASEDNEEEDEDEGLGVDL
SFIGSHAFARMEGDIDKQRKLILQGQLSEAALQKQHQRNYNRWLCQARSEDLSDIASLKALYQTGVDNCG
RTVMVVVGRNIPVTLIDMDKALLYFIHVMDHIAVKEYVLVYFHTLTSDYNHLDSDFLKKLYDVVDIKYKR
NLKAVYFVHPTFRSKVSTWFFTTFSVSGLKDKIHHVDSLQQLFSAISPEQIDFPPFVLEYDARENGPYFA
SYPPSPDL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH