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Report for CCDS38964.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38964.1 Public Mus musculus 4 Fv1 23 108 98 CCDS HistoryNCBI Gene:14349Re-query CCDS DB by CCDS ID:38964.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38964.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000094481.1 ENSMUSP00000092054.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000094481.1Link to Ensembl Protein Viewer:ENSMUSP00000092054.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000094481Re-query CCDS DB by Protein ID:ENSMUSP00000092054
Original member Current member NCBI NM_010244.3 NP_034374.2 Accepted alive Link to Nucleotide Sequence:NM_010244.3Link to Protein Sequence:NP_034374.2Re-query CCDS DB by Nucleotide ID:NM_010244Re-query CCDS DB by Protein ID:NP_034374Link to BLAST:NP_034374.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034374.2 459 P70213 459 100% 0 0

Chromosomal Locations for CCDS 38964.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 147868979 147870358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1380 nt):
ATGAATTTCCCACGTGCGCTTGCTGGTTTCTCGAGCTGGCTCTTCAAACCTGAACTTGCCGAGGACTCTC
CGGATAATGACTCTCCGGATAATGACACTGTTAACCCATGGCGTGAGCTGCTGCAGAAGATAAATGTGGC
CGATCTCCCCGATTCATCCTTTTCGAGCGGTAAGGAACTTAATGACTCTGTGTACCATACTTTTGAACAT
TTCTGCAAGATTAGGGACTATGACGCAGTTGGCGAGCTGCTTCTGGCATTTCTGGATAAAGTAACAAAGG
AAAGGGACCAATTCAGAGATGAAATTTCCCAGCTCCGAATGCACATAAATGATCTAAAGGCTTCTAAGTG
TGTCCTGGGGGAGACTCTTCTTTCCTACCGCCACAGGATTGAAGTTGGGGAAAAACAGACTGAAGCCCTC
ATTGTGAGGTTAGCTGATGTGCAATCCCAGGTCATGTGTCAGCCTGCCCGGAAAGTGTCTGCAGATAAGG
TGAGGGCACTGATTGGTAAAGAATGGGATCCGGTAACCTGGGATGGAGATGTGTGGGAGGACATAGATTC
TGAAGGGTCTGAGGAAGCTGAGTTGCCCACTGTCTTGGCCTCTCCATCCTTGTCTGAGGAAAGTGGTTAT
GCCTTGTCTAAAGAACGCACCCAGCAGGACAAAGCAGATGCCCCTCAGATCCAGTCTTCAACATCCTTAG
TTACTTCTGAACCTGTCACCAGACCCAAGTCTCTGTCTGACCTTACAAGTCAGAAACACCGCCATACTAA
TCATGAACTCAATTCACTTGCTCACTCAAATCGCCAAAAGGCAAAGGAACATGCTAGGAAATGGATTTTA
AGGGTGTGGGATAATGGTGGGAGGCTCACAATACTGGATCAGATTGAATTTCTCAGTTTAGGTCCTTTGA
GCCTTGATAGTGAGTTTAATGTCATAGCCCGCACTGTTGAAGATAATGGTGTGAAGAGTTTGTTTGATTG
GTTGGCTGAAGCATGGGTCCAGAGATGGCCTACTACAAGAGAGCTGCAGTCGCCTGACACCCTGGAGTGG
TATTCTATTGAGGATGGGATTGAAAGGCTTAGGGAACTTGGAATGATAGAGTGGCTTTGTGTAAAAGCTA
CTTGTCCACAGTGGAGGGGCCCGGAAGATGTACCCATCACGAGAGCTATGAGGATAACTTTTGTCCGGGA
AACTAGAGAGACTTGGAAGAGCTTTGTATTTAGCCTCCTCTGTATAAAGGACATAACAGTGGGGAGCGTG
GCTGCTCAGTTGCATGATCTAATAGAATTAAGTTTAAAGCCAACAGCAGCTGGCTTGACTTCTGTAGGCT
CTGTGGGGGTTCTCTCTCTCTCTCCCTGGAAACATCAAAGCAACAGTTAA

Translation (459 aa):
MNFPRALAGFSSWLFKPELAEDSPDNDSPDNDTVNPWRELLQKINVADLPDSSFSSGKELNDSVYHTFEH
FCKIRDYDAVGELLLAFLDKVTKERDQFRDEISQLRMHINDLKASKCVLGETLLSYRHRIEVGEKQTEAL
IVRLADVQSQVMCQPARKVSADKVRALIGKEWDPVTWDGDVWEDIDSEGSEEAELPTVLASPSLSEESGY
ALSKERTQQDKADAPQIQSSTSLVTSEPVTRPKSLSDLTSQKHRHTNHELNSLAHSNRQKAKEHARKWIL
RVWDNGGRLTILDQIEFLSLGPLSLDSEFNVIARTVEDNGVKSLFDWLAEAWVQRWPTTRELQSPDTLEW
YSIEDGIERLRELGMIEWLCVKATCPQWRGPEDVPITRAMRITFVRETRETWKSFVFSLLCIKDITVGSV
AAQLHDLIELSLKPTAAGLTSVGSVGVLSLSPWKHQSNS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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