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Report for CCDS16901.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16901.1 Public Mus musculus 2 Foxs1 23 108 98 CCDS HistoryNCBI Gene:14239Re-query CCDS DB by CCDS ID:16901.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 16901.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099200.2 ENSMUSP00000096806.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099200.2Link to Ensembl Protein Viewer:ENSMUSP00000096806.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000099200Re-query CCDS DB by Protein ID:ENSMUSP00000096806
Original member Current member NCBI NM_010226.2 NP_034356.1 Accepted alive Link to Nucleotide Sequence:NM_010226.2Link to Protein Sequence:NP_034356.1Re-query CCDS DB by Nucleotide ID:NM_010226Re-query CCDS DB by Protein ID:NP_034356Link to BLAST:NP_034356.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034356.1 329 Q61574 329 100% 0 0

Chromosomal Locations for CCDS 16901.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 152932142 152933131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (990 nt):
ATGCAGAAGCAACCATCACCAGAATCCTTGGCTCCTTCTGCAGAGCCCACCAAGCCCCCTTACAGCTACA
TAGCCCTGATTGCCATGGCTATCCAGAGTTCACCGGGTCAGCGGGCCACCCTCAGTGGCATCTACCGCTA
CATCATGGGCCGCTTTGCCTTTTACCGGCACAACCGGCCGGGCTGGCAAAACAGCATCCGCCATAACCTG
TCTCTCAACGAGTGTTTCGTCAAGGTGCCTCGTGATGACCGCAAGCCAGGCAAGGGCAGCTACTGGACCC
TGGATCCGGACTGCCACGACATGTTCCAGCATGGCAGCTTTCTCCGTCGCCGCAGACGCTTCACCAAACG
CACAGGTGCGCAGGGCACCAAGGGCCCTGTCAAGATAGACCACAGACCCCACAGAGCCACCAGCCCGGAC
CCAGGAGCCCCCAAGACCACAACTGGCAGACTGTGCCCATTCCCACAAGAGGTGCCAAACCCCAAGGGCT
TAAGCTTTGAGGGTCTGATGGGGTCTTTGCCAGCCAACATGAGCTCAACAACCAGTGACGTCAGGCCCCA
ACTGCCCACTGGACCCAAAGAGATGTGCTCGGCAAAGTCTGGAGGCCCAAGGGAGCTCTCTGAAGCTACC
TCGCCCTCACCGTGCCCAGCATTCGGCTTTTCATCTGCCTTCTCTGACGCTGAGAGTCTCGGCAAGGCCC
CCACACCCGGTGTGGCTCCTGAGAGCGTTGGGAGCAGCTACCAGTGCCGGATGCAGACACTGAATTTCTG
TATGGGGACTGACCCAGGCCTTGAACACCTCCTGGTCTCTTCAGTCCCCACCCCTGGATCCTCGACACCT
TCAGCCTCTCACCGGGCCCCACTGCCCCTGCCGGCTGACTCCAAAGAACCCTGGGTGGCTGGGAGCTTCC
CTGTCCAGGGAGGTTCTGGCTATCCACTGGGATTACCCCCCTGTCTTTACCGGACTCCGGGAATGTTCTT
CTTCGAGTGA

Translation (329 aa):
MQKQPSPESLAPSAEPTKPPYSYIALIAMAIQSSPGQRATLSGIYRYIMGRFAFYRHNRPGWQNSIRHNL
SLNECFVKVPRDDRKPGKGSYWTLDPDCHDMFQHGSFLRRRRRFTKRTGAQGTKGPVKIDHRPHRATSPD
PGAPKTTTGRLCPFPQEVPNPKGLSFEGLMGSLPANMSSTTSDVRPQLPTGPKEMCSAKSGGPRELSEAT
SPSPCPAFGFSSAFSDAESLGKAPTPGVAPESVGSSYQCRMQTLNFCMGTDPGLEHLLVSSVPTPGSSTP
SASHRAPLPLPADSKEPWVAGSFPVQGGSGYPLGLPPCLYRTPGMFFFE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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