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Report for CCDS16467.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16467.1 Public Mus musculus 2 Fjx1 23 108 98 CCDS HistoryNCBI Gene:14221Re-query CCDS DB by CCDS ID:16467.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 16467.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099678.4 ENSMUSP00000097270.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099678.4Link to Ensembl Protein Viewer:ENSMUSP00000097270.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000099678Re-query CCDS DB by Protein ID:ENSMUSP00000097270
Original member Current member NCBI NM_010218.2 NP_034348.2 Accepted alive Link to Nucleotide Sequence:NM_010218.2Link to Protein Sequence:NP_034348.2Re-query CCDS DB by Nucleotide ID:NM_010218Re-query CCDS DB by Protein ID:NP_034348Link to BLAST:NP_034348.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034348.2 450 Q8BQB4 450 100% 0 0

Chromosomal Locations for CCDS 16467.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 102450236 102451588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1353 nt):
ATGGGGAGGAAGATGCGGGGCGCCGCCGCCGCCGCGGGGCTCTGGCTGCTGGCTTTGAGCTCGCTGCTGA
CGCTGTGGGGAGGACTCCTGCCACCGCGGACCGAGCTGCCAGCCTCCCGGCCGCCCGAAGATCGACTCCC
TCCGCATCCGATCCAGAGTGGCGGCCCCGCGCCCGAGCCGCGATTCCCTCTGCCCCCGCCCCTAGTATGG
GACGCCCGCGGCGGCTCCCTGAAAACTTTCCGGGCGCTGCTCACCCTGGCGGCCGGCGCGGATAACCCGC
CTAGGAGGCACCAGGACGACCGCGGGCGGCACGAGCCCTCCGGGCTGTCCTGGCCAGAGGAGCGCAGGGC
GGTGCACGGGGGCGTCTTCTGGAGCCGCGGCCTGGAGGAGCAGGTTCCCCGGGGCTTTTCCGAAGCCCAA
GCAGCAGCGTGGCTGGAGGTGGCACGGGGTGCTCGGGTGGTGGCTCTGGATCGCGGGGGCTGCGGACGCA
GTTCCAACCGCCTAGCCCGCTTTGCCGACGGCACCCGTGCCTGTGTACGCTACGGCATCAACCCAGAGCA
GATACAGGGCGAGGCCCTGTCCTACTACCTTGCGCGCCTGCTGGGCCTCCAGCGCCACGTGCCGCCGCTG
GCACTGGCTCGGGTGGAGGCTCGGGGCGCGCAGTGGGTGCAGGTGCAGGAGGAGCTGCGCACCGCGCACT
GGACCGAGGGCAGCGTGGTGAGCCTGACGCGCTGGCTGCCTAACCTCACCGACGTGGTGGTGCCCGAGCC
CTGGCGATCAGAGGACGGCCGTCTGCGGCCCCTGCGCGACGCCGGGGGCGAGCTGACCAACCTCAGCCAG
GCGGAGCTGGTGGACTTGGTACAATGGACCGATCTGATCCTCTTCGATTACCTGACGGCCAACTTTGACC
GGCTTGTGAGCAACCTCTTCAGCTTACAGTGGGACCCACGCGTTATGCACCGCGCTACGAGCAACCTGCA
CCGAGGACCAGGAGGGGCGTTGGTCTTTCTGGACAATGAGGCGGGCTTGGTGCACGGCTACCGGGTAGCC
GGCATGTGGGACAAGTATAACGAACCGCTGCTACAGTCGGTGTGTGTATTCCGAGAGCGGACTGCTAGGC
GCGTCTTGGAGCTGCACCGGGGTCAGGACGCGGCGGCCCGGTTGCTGCGCCTCTACAGTCGCCACGAACC
GCGTTTCCCAGAGCTGGCGGAGCTCTCAGAACCCCACGCTCAGCTGCTACAGCGCCGCCTTGACTTCCTC
GCCAAACACATTTTGCACTGCAAGGCCAAGTACGGCCGCCGGCCCGGGGACTTAATAACACTCCGAGGAA
GAGAGGGACTGGGGTATGAATGA

Translation (450 aa):
MGRKMRGAAAAAGLWLLALSSLLTLWGGLLPPRTELPASRPPEDRLPPHPIQSGGPAPEPRFPLPPPLVW
DARGGSLKTFRALLTLAAGADNPPRRHQDDRGRHEPSGLSWPEERRAVHGGVFWSRGLEEQVPRGFSEAQ
AAAWLEVARGARVVALDRGGCGRSSNRLARFADGTRACVRYGINPEQIQGEALSYYLARLLGLQRHVPPL
ALARVEARGAQWVQVQEELRTAHWTEGSVVSLTRWLPNLTDVVVPEPWRSEDGRLRPLRDAGGELTNLSQ
AELVDLVQWTDLILFDYLTANFDRLVSNLFSLQWDPRVMHRATSNLHRGPGGALVFLDNEAGLVHGYRVA
GMWDKYNEPLLQSVCVFRERTARRVLELHRGQDAAARLLRLYSRHEPRFPELAELSEPHAQLLQRRLDFL
AKHILHCKAKYGRRPGDLITLRGREGLGYE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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