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Report for CCDS30467.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30467.1 Public Mus musculus X Fgd1 23 108 98 CCDS HistoryNCBI Gene:14163Re-query CCDS DB by CCDS ID:30467.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30467.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026296.7 ENSMUSP00000026296.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026296.7Link to Ensembl Protein Viewer:ENSMUSP00000026296.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000026296Re-query CCDS DB by Protein ID:ENSMUSP00000026296
Original member Current member NCBI NM_008001.4 NP_032027.2 Accepted alive Link to Nucleotide Sequence:NM_008001.4Link to Protein Sequence:NP_032027.2Re-query CCDS DB by Nucleotide ID:NM_008001Re-query CCDS DB by Protein ID:NP_032027Link to BLAST:NP_032027.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032027.2 960 P52734 960 100% 0 0

Chromosomal Locations for CCDS 30467.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 151047675 151047981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 151066181 151066354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 151066710 151066887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 151067013 151067451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 151068877 151068966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 151069642 151069790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 151072173 151072329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 151072434 151072572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 151078959 151079017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 151079158 151079304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 151079879 151079971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 151080117 151080196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 151085631 151085661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 151086114 151086215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 151086520 151086645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 151086820 151086981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 151087968 151088111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 151088603 151088908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2883 nt):
ATGCATGGCCACCGAGTCCCGGGGGGCCCTGGGCCTTCGGATCCCGAACGCTCAGCGGCAAATACCCCCG
GTGCCGCTCCGCTGGCCTGTGCCGACTCGGACCCTGGAGCCTTGGAACCCGGGCTGCCGGTGAGCAGGGG
CTCAGGCACGGCTCTTGGAGGCCCTTTGGATCCTCAGTTTGTTGGACCCTCGGATGCCAGCCTGGGAGCG
CCTCCAAGCTCCCGGGTCTTACCCTGCGGCCCTAGTCCTCAGCACCACCGGGCCCTGCGCTTCTCCTACC
ACCTGGAGGGCTCGCAGCCTCGGCCTGGACTGCACCAGGGAAACCGGATCCTGGTTAAAAGTTTGTCCCT
TGACCCTGGCCAGAGCCTTGAGCCTCATCCAGAAGGTCCCCAACGGCTTCGCTCAGATCCAGGCCCTCCC
ACTGAAATCCCTGGCCCACGTCCTTCACCACTGAAGCGGGCACCGGGCCCAAAGCCACAGGTTCCCCCAA
AGCCCAGCTACCTGCAGATGCCCCGGGTGCTTCCTCCTCCTGAGCCCATTCCTCCACCACCATCACGCCC
TCTGCCTGCAGACCCTAGAGTGGCCAAGGGACTCGTCCCCAGAGCTGAGGCCAGCACTAGTTCTGCAGCA
GTATCATCATTGATTGAGAAGTTTGAAAGAGAGCCTGTGATTGTTGCCTCGGATAGGCCAGCCCCTGGCC
CCTGCCCAGTTCCCCCAGAGCCAGCCATGTTGCCACAGCCACCCCCGCAGCCAACAGGGTCCCAGCTCCC
TGAGGGTGAAGCTTCTCGCTGCCTGTTCCTGCTGGCTCCTGGGCCCCGGGATGGTGAGAAGGTGCCTAAC
CGGGACAGCGGCATTGACAGCATCAGCTCGCCATCCAACAGTGAAGAGACCTGCTTCGTCAGTGATGATG
GGCCCCCCATCCACAGCCTCTGTCCTGGGCCCCCCGCCCTGGCTAGTATGCCAGTAGCTTTGGCCGACCC
CCACCGGCCTGGCTCCCAGGAGGTTGACAGTGACCTGGAAGAGGAAGAGGAAGAAGAAGAGGAGGAAAAG
GAAAGAGAAATTCCAGTGCCCCCGATGGAGAGACAGGAGTCTGTGGAGCTGACTGTGCAGCAGAAGGTGT
TCCATATTGCCAATGAGCTCCTGCAAACTGAGAAGGCCTATGTTTCCAGGCTCCATCTCCTGGATCAGGT
ATTCTGTGCCCGGCTGCTGGAAGAAGCTCGGAACCGCAGTTCCTTCCCCGCAGATGTTGTCCACGGCATC
TTCTCTAACATCTGCTCCATCTATTGCTTCCACCAGCAGTTCCTGCTGCCTGAGCTAGAGAAGCGCATGG
AGGAATGGGACCGCTACCCACGCATTGGTGACATTCTTCAGAAGTTGGCACCCTTCCTCAAGATGTATGG
CGAGTATGTGAAAAACTTCGACCGGGCGGTAGAGCTGGTCAACACATGGACAGAGCGGTCTACCCAGTTT
AAAGTCATCATCCATGAAGTACAGAAGGAGGAAGCCTGTGGCAACCTGACCTTGCAGCACCACATGCTGG
AGCCCGTGCAGCGTATCCCCCGCTATGAACTTCTTCTCAAGGACTATCTGTTAAAGCTGCCTCATGGCTC
CCCGGACAGCAAGGATGCCCAGAAGTCTTTGGAGCTGATAGCCACAGCAGCAGAACACTCTAATGCTGCC
ATCCGGAAAATGGAACGAATGCACAAGCTGCTGAAGGTGTATGAGCTGCTAGGGGGTGAGGAGGACATTG
TCAGTCCCACCAAAGAGCTCATAAAGGAAGGCCATATCCTTAAGCTGTCAGCAAAGAATGGGACCACTCA
AGATCGATACCTCATATTATTCAACGACCGCCTCCTTTACTGCGTGCCCAGGCTGCGGCTCCTTGGTCAG
AAGTTTAGCGTGCGGGCACGCATTGATGTAGATGGCATGGAGCTAAAGGAGAGCTCCAACCTCAACATGC
CTCGGACCTTCCTGGTGTCAGGAAAGCAGCGCTCTCTCGAACTGCAGGCCAGGACTGAGGAGGAGAAGAA
AGACTGGGTCCAGGCCATCAATTCCACCCTCCTGAAGCATGAACAGACCCTGGAGACTTTCAAACTGTTG
AACTCAACAAACAGGGATGATGAAGATACTCCCCCTAACTCTCCAAACGTGGATCTTGGGAAGAGGGCAC
CTACGCCTATCCGGGAAAAGGAAGTCACCATGTGCATGCGCTGCCAGGAGCCCTTCAATTCCATCACCAA
ACGCAGGCACCACTGCAAGGCCTGTGGGCATGTGGTTTGTGGGAAATGCTCTGAGTTCCGAGCCCGACTC
ATCTATGACAACAATCGTTCCAACCGTGTGTGCACTGATTGCTATGTGGCCTTGCATGGAGCACCTGGGA
GCAGTCCAGCCTGTAGCCAGCATACACCCCAGCGCAGGAGGTCCATCCTAGAGAAACAGGCCTCGGTCGC
TGCTGAGAACAGCGTCATCTGCAGCTTCCTGCACTACATGGAGAAGGGTGGGAAAGGATGGCACAAGGCA
TGGTTTGTGGTTCCTGAGAATGAACCCTTGGTGCTGTACATCTATGGAGCCCCTCAGGATGTGAAAGCCC
AGCGCAGCCTGCCCCTCATTGGCTTTGAGGTGGGGCCTCCTGAGGCAGGAGAGCGGCCAGACAGGAGGCA
TGTCTTCAAGATCACACAAAGCCACCTAAGCTGGTACTTCAGCCCAGAGACAGAAGAACTCCAGCGGCGC
TGGATGGCTGTTCTCGGCAGGGCGGGCCGTGGGGACACATTCTGCCCAGGGCCCACACTGTCTGAGGACA
AGGAGATGGAGGAGACACCAGTGGCAGCCTCAGGAGCCACTGCTGAACCTCCTGAAGCCTCCCAGACCCG
AGACAAGACCTAG

Translation (960 aa):
MHGHRVPGGPGPSDPERSAANTPGAAPLACADSDPGALEPGLPVSRGSGTALGGPLDPQFVGPSDASLGA
PPSSRVLPCGPSPQHHRALRFSYHLEGSQPRPGLHQGNRILVKSLSLDPGQSLEPHPEGPQRLRSDPGPP
TEIPGPRPSPLKRAPGPKPQVPPKPSYLQMPRVLPPPEPIPPPPSRPLPADPRVAKGLVPRAEASTSSAA
VSSLIEKFEREPVIVASDRPAPGPCPVPPEPAMLPQPPPQPTGSQLPEGEASRCLFLLAPGPRDGEKVPN
RDSGIDSISSPSNSEETCFVSDDGPPIHSLCPGPPALASMPVALADPHRPGSQEVDSDLEEEEEEEEEEK
EREIPVPPMERQESVELTVQQKVFHIANELLQTEKAYVSRLHLLDQVFCARLLEEARNRSSFPADVVHGI
FSNICSIYCFHQQFLLPELEKRMEEWDRYPRIGDILQKLAPFLKMYGEYVKNFDRAVELVNTWTERSTQF
KVIIHEVQKEEACGNLTLQHHMLEPVQRIPRYELLLKDYLLKLPHGSPDSKDAQKSLELIATAAEHSNAA
IRKMERMHKLLKVYELLGGEEDIVSPTKELIKEGHILKLSAKNGTTQDRYLILFNDRLLYCVPRLRLLGQ
KFSVRARIDVDGMELKESSNLNMPRTFLVSGKQRSLELQARTEEEKKDWVQAINSTLLKHEQTLETFKLL
NSTNRDDEDTPPNSPNVDLGKRAPTPIREKEVTMCMRCQEPFNSITKRRHHCKACGHVVCGKCSEFRARL
IYDNNRSNRVCTDCYVALHGAPGSSPACSQHTPQRRRSILEKQASVAAENSVICSFLHYMEKGGKGWHKA
WFVVPENEPLVLYIYGAPQDVKAQRSLPLIGFEVGPPEAGERPDRRHVFKITQSHLSWYFSPETEELQRR
WMAVLGRAGRGDTFCPGPTLSEDKEMEETPVAASGATAEPPEASQTRDKT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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