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Report for CCDS29303.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29303.1 Public Mus musculus 18 Fech 23 108 98 CCDS HistoryNCBI Gene:14151Re-query CCDS DB by CCDS ID:29303.1See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29303.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000236586.1 ENSMUSP00000157791.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000236586.1Link to Ensembl Protein Viewer:ENSMUSP00000157791.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000236586Re-query CCDS DB by Protein ID:ENSMUSP00000157791
Original member NCBI NM_007998.7 NP_032024.2 Updated not alive Link to Nucleotide Sequence:NM_007998.7Link to Protein Sequence:NP_032024.2Re-query CCDS DB by Nucleotide ID:NM_007998Re-query CCDS DB by Protein ID:NP_032024
Current member NCBI NM_007998.8 NP_032024.2 Accepted alive Link to Nucleotide Sequence:NM_007998.8Link to Protein Sequence:NP_032024.2Re-query CCDS DB by Nucleotide ID:NM_007998Re-query CCDS DB by Protein ID:NP_032024Link to BLAST:NP_032024.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032024.2 422 P22315 422 100% 0 0

Chromosomal Locations for CCDS 29303.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 64458083 64458217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 64458655 64458714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 64461521 64461685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 64462107 64462214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 64464086 64464184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 64467728 64467834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 64470682 64470816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 64475057 64475205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 64478651 64478770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 64483334 64483457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 64488901 64488967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1269 nt):
ATGCTTTCGGCCAGCGCCAACATGGCTGCGGCCCTGCGGGCTGCGGGCGCTCTGCTCCGCGAGCCGCTGG
TGCACGGCAGCTCAAGGGCCTGTCAGCCATGGAGGTGCCAGTCGGGTGCTGCGGTGGCAGCCACCACGGA
GAAGGTACATCATGCCAAGACCACCAAACCCCAAGCTCAACCAGAAAGGAGGAAGCCAAAAACGGGCATA
TTGATGTTAAACATGGGAGGCCCCGAAACCCTTGGAGAAGTTCAAGACTTTCTTCAGAGGCTCTTCCTGG
ACCGAGACCTCATGACACTTCCCATTCAAAATAAGCTGGCACCATTCATCGCCAAACGCCGAACCCCCAA
AATTCAAGAGCAGTATCGCAGAATCGGAGGTGGATCCCCCATCAAGATGTGGACTTCCAAGCAAGGAGAA
GGCATGGTGAAGCTGCTGGATGAGTTATCCCCTGCCACAGCACCTCACAAATACTATATTGGATTCCGGT
ACGTCCATCCCCTGACAGAAGAGGCAATTGAAGAGATGGAGAGAGATGGACTAGAGAGGGCCATTGCTTT
CACACAGTATCCACAGTATAGCTGCTCCACCACAGGCAGCAGCTTAAATGCCATTTACAGATACTATAAC
GAGGTGGGCCAGAAGCCCACCATGAAGTGGAGCACAATCGACAGGTGGCCCACACACCCCCTCCTCATCC
AGTGCTTTGCAGACCACATTCTGAAAGAGCTGAACCATTTTCCAGAGGAGAAGAGAAGCGAGGTGGTCAT
TCTGTTTTCTGCCCACTCCCTGCCGATGTCTGTTGTCAACAGAGGGGACCCCTATCCCCAAGAGGTAGGA
GCCACTGTCCACAAAGTCATGGAAAAGCTGGGTTACCCCAACCCCTACCGACTGGTTTGGCAGTCCAAGG
TTGGTCCAGTACCCTGGTTGGGCCCTCAGACAGATGAGGCTATCAAAGGGCTTTGTGAGCGGGGGAGGAA
GAACATCCTCTTGGTTCCAATAGCATTTACCAGTGACCACATTGAGACGCTCTACGAACTGGATATTGAA
TACTCTCAAGTGTTGGCTCAGAAGTGTGGAGCTGAGAACATCAGAAGAGCGGAGTCTCTTAATGGAAATC
CATTGTTCTCCAAGGCCCTGGCTGATCTGGTGCACTCCCACATCCAGTCCAACAAGCTGTGCTCCACGCA
GTTGAGTCTGAACTGTCCGCTCTGTGTAAATCCTGTCTGCAGGAAGACTAAATCCTTCTTCACCAGCCAA
CAGCTGTGA

Translation (422 aa):
MLSASANMAAALRAAGALLREPLVHGSSRACQPWRCQSGAAVAATTEKVHHAKTTKPQAQPERRKPKTGI
LMLNMGGPETLGEVQDFLQRLFLDRDLMTLPIQNKLAPFIAKRRTPKIQEQYRRIGGGSPIKMWTSKQGE
GMVKLLDELSPATAPHKYYIGFRYVHPLTEEAIEEMERDGLERAIAFTQYPQYSCSTTGSSLNAIYRYYN
EVGQKPTMKWSTIDRWPTHPLLIQCFADHILKELNHFPEEKRSEVVILFSAHSLPMSVVNRGDPYPQEVG
ATVHKVMEKLGYPNPYRLVWQSKVGPVPWLGPQTDEAIKGLCERGRKNILLVPIAFTSDHIETLYELDIE
YSQVLAQKCGAENIRRAESLNGNPLFSKALADLVHSHIQSNKLCSTQLSLNCPLCVNPVCRKTKSFFTSQ
QL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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