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Report for CCDS22753.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22753.1 Public Mus musculus 8 Fanca 23 108 98 CCDS HistoryNCBI Gene:14087Re-query CCDS DB by CCDS ID:22753.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22753.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035495.14 ENSMUSP00000045217.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035495.14Link to Ensembl Protein Viewer:ENSMUSP00000045217.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000035495Re-query CCDS DB by Protein ID:ENSMUSP00000045217
Original member NCBI NM_016925.3 NP_058621.2 Updated not alive Link to Nucleotide Sequence:NM_016925.3Link to Protein Sequence:NP_058621.2Re-query CCDS DB by Nucleotide ID:NM_016925Re-query CCDS DB by Protein ID:NP_058621
Current member NCBI NM_016925.4 NP_058621.2 Accepted alive Link to Nucleotide Sequence:NM_016925.4Link to Protein Sequence:NP_058621.2Re-query CCDS DB by Nucleotide ID:NM_016925Re-query CCDS DB by Protein ID:NP_058621Link to BLAST:NP_058621.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_058621.2 1439 Q9JL70 1439 100% 0 0

Chromosomal Locations for CCDS 22753.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 123268442 123268549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123268745 123268837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123268943 123269078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123269290 123269362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123269860 123269965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123270232 123270294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123271205 123271340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123272320 123272432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123274148 123274252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123274337 123274396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123274468 123274573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123275132 123275304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123278260 123278344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123281192 123281320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123282618 123282691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123284009 123284185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123286470 123286551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123288061 123288251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123288386 123288482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123288724 123288794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123289361 123289497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123289799 123289912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123291397 123291473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123295006 123295055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123295132 123295192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123296294 123296382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123297767 123297826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123297910 123298005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123300010 123300120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123304292 123304425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123304738 123304879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123305253 123305329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123305750 123305862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123306425 123306488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123307130 123307163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123307714 123307796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123308505 123308617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123312584 123312657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123313021 123313116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123313240 123313373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123316363 123316456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123318062 123318171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123318475 123318553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4320 nt):
ATGCCGGGCTCGCCGGCTAGGGGTGCTGCCATGGGTGGTGGGCCCCGGGGCCTCCGAAAAACTTGGACCG
AGCTGCTGGCGGGCAGAGTCAAAAAGCAAAAATATGATCCTGAAAGGGAACAGAAATTAAAGGATTCTGC
TCTGAAACTCCTGAGATACCATCAAAATATGCATGACCTTTTGCTAGAGGTAGAAGAGCCACAGTGTAAA
AGGTTGCGTCTCAGTGAGCTGATCGACCGCGACAGTGCTGACGCTTCCTCCGACCGGTCTGCTTCCTTCA
TCCGCTCTGCTTTCCGGGATCAGGCCTCGAGGCTGGGAGTTCCTGTGGGGGTGCTATCTGCCAAAGTGTT
TGCTCGCAGTGTGCAGCAGGTCTGCGTGGAGCCCAGCCACCCCGTGCTGCTCAGCCCGGAACAAAGTAAG
AAGCTGTCTTCCTTACTAATGATTGCCCGGCATTTGTTGGCACAAAATATGTTCTCCCGTCTCACCTTCT
GTCAGGAATTATGGAAAGCACAGAACTCTTTGTTGCTGGAAGCTATGTGGCGTCTTCACACGCACAGCGT
CGTGAGCCTACAGGAGCTACTGCAGAGCCATCCTGACTCGGAAGCCATGGCCATGTGGCTCTTCAGGAAC
CTACGATCTCTGTGTGAGCAGATAGGTGCATCCTGCCCATCCCCAGATACTACGGAAGCCATGCTCTCTG
GTCTTGTGCAACTGTTAATTTCAAGGGGGTTTCAGGGAAGCTCAGACCCAAGAAGACTTGTAGAGCCCGA
AAGGCTGCCCCAGGTTGCCACTGATGTACTGCAGAGGATGCTGGCTTTTTCACTTGATACCCTGGAGGCT
GATCCACAGACGACTTTGGATTGCCAGGCAGTGAGTGGCTGGATTCCTATCTACTCCGGACATACGTGCT
GTGGTGTGGTAACAGAGAATTCTCTGAAGAGCTTCTTCAGTCACACGCTAACTCAGATTCTGACTCACAA
GCCCGTGCTGAAAGTGTCTGATGCCATTCAGATGCAGAAAGAGTGGAGCTTTGCAAAGACACATCATCTG
CTCACGGATCTGCACTGCAGGGTTTTGGCGACCCTGGGTCCAGAGGAGTCAGTTGGCCGTTTGCAGGAAG
TCCTGGAGATGCAGGAGGTTAACTGGCAACATGTGCTCTCCTGTGTGTCTACCCTGGTCGTCTGCTTTCC
CGAGGCACAGCAGTTGGTTAAAGGTTGGGTAGCCTCTTTGATGGCCCGGGCCTTTGAGAGCTACCACCTA
GACAGCATGGTCACTGCGTTCCTGATCGTGCGCCAGGCTACTCTGGAGGGCCCCTATGTATTCCCATCCT
ATGCAGATTGGTTCAAGGAGTCCTTTGGGAGCTCACATGGCTACCACAGCTGCAGCAAGAAAACACTGGT
CTTCCTCTTCAAGTTCCTGTCTGACCTCGTGCCCTGGGAAGCCCCTCGGTACATGCAGGTGCATATTTTC
CACCCACCCCTGGTGCCAAGCAAGTACCACTCCCTCCTTACAGACTACATCTCCTTGGCCAAGACAAGAC
TTGCTGACCTCAAGGTTTCCCTGGAGAATGTGGGGCTCTACGAGGATTTGTCATCCCCTGGGGACATTGC
CGAGCGTGAGAGCCAAGCGGTGCAGGATGTTAAGAAGGCCATCATGGTGTTTGAACAAACAGGGAAGATC
CCAATGCCTGTCCTGGAGGCCAGCATATTCAGGAGGCCCTACTATGTGTCACACTTCCTCCCCACGCTGC
TTGCTCCGAGAGTGCTCCCAGAGGTTCCTGACCCCCGGGTGGCCTTGATAGAGACCCTGAAGAGAGCAGA
TAAGATTCCCTCCTCGATCTACGATGCCTACCGGAAAGCCTGTGCCTCTGCTGAGAAGCAGCAGCCTGAA
AATGCCACCTCGGCTCAAAGGACAGAGGCCGACTGTGCCAAAGAGCCCCTGGGACTGCTCACAGCAGCAC
TGGAAGAGCTCAGAGCTTTAATGACAGACCCGACCCAATACAGTGTTATTTCTGCTCAGGTGGCCGTGGT
TTCTGAAAAACTAAATGCTGTTCTGGGACACAGGAATGATGGTGGCAGCCTCCAGAGAGCAAAGATTCAG
CTCAGTGTCCTTCCTTCCACACTGCAGAAGCAGGACCAGGCGGTTGTGGATCTCCTGCTGACAGCCTTCT
GTCAGAACCTAATGGCAGCCTCTAGCTTTGTGCCCCCAGAGAGGCAGAGCCCCTGGGCTGTCCTTTTCGT
GAGGACCCTTTGTGGACACGTGCTTCTCCCTGCAGTTCTCACTCGGCTCCGCCAGCTGCTCCGCCACCAG
GGCCAGAGCTTGAGCACCTCTCATGTCCTGGGCTTGGCTGCTCTTGCTGTCCATCTGGGCGAGTGCAGGT
CCATGCTTCCAGAGGTGGATCCAGATGTTCTTGCTCCTTCTGCCGGCAGCCTCTGTGTCCCTGACTTCTT
AAACAGCCTCCTGACCTGCCGCACGAGGGACTCTCTGCTCTTCTGCATGAACTTCTGCACAGCAGCGGTT
TCTTACTGTTTGTGCAAGTTCTCTGCCCTGCGCAACTGTTTGTCTCCAGGTCTGATCAAAAAGTTTCAGT
TCGTTGTGTTAAGATTGTTCCCAGAGGCCAGAGCACCTTGTGCTCCAGAGCATGCAGCTTGCGTCCCCTG
GAGACCTCTGTACCTTCCTTCTGCAGACTGGCAGCGTGCTGCGCTCTCTCTGTGGAGACGGGACAGCTTC
CAAGAGCTCCTGAAGGACAAGGAATTTTATTTAACTTACAGAGATTGGGTACAGCTGGAACTGGAAATTC
AACCTGAAGCGGATGTTCTCTCAGACATGGAAAGACATGACTTCCATCAATGGGCAATCTATGAGCGCTA
CTTGCCAGCTCCGACGGCTTTGGGCGGCTGTGGTGGAGACCTGGAAGAGGCGTGCACAGTCCTTGTCAGC
GAGATCATGGACTTCCACCAAAGTTCGAGGAGTTACAATCACTCAGAGGACTCAGACCTGGTTCTTGGTG
GCCGCACAGGAAACAAGGATATTCTTTCCAGGCTACAGGAGATCGCTCTGGACTTGGAGCTGGATCAAGG
TTCTGCTGTGCCCCATGGCTGTTCTACGCCGCAGAGTCACTTTCTGTTTCGGGTGTTCAGAAGACGGCTG
CAGGCTCTGGCAAGGCCAGACAGCATGGCTACCAGCCTCAGGAGACAACAAGAACTGCTCACATGCAAAC
GGCTTCTCCTCTGCCTGCCTCCATCTGTTCTCGTGGGTGGCCCCCAGGCCGGACAACCTATCTCCCCCAA
CTGTGGAGAGTTCTTTAGCCTGGTCAACTCTGAGTTGAGAAACTTCTGTTGCCACGGCAGTGTCCTGACC
TCTGACATTACCATCCACTTCTTCAGGGGGCTCCTTCGTGTGTGTCTCCGAAGTCAAGACCCAGCATTGG
TGGCCAACCAGACACTGACAGAATGCCAGACTAAGTGTCCCGTGATTCTGACTTCAGCACTGTTGTGGTG
GTCGAGCCTGGAGCCAGTGCTGTGTGGTCGGTGGATGAGATGTTATCAGAGCCCACTGCCTCGAGAGCTG
CGGAGGCTCCAGGAGGCCCGGGAATTTGCTAGCAATTTCGCCTCCGCGTCAGCTTCCCCAGCACCCAGCC
CCGCCTGGATCGCAGCTGCTGCGCTGCACTTTGCGTGGAGAGGAGTTAGGAAGGAAGATGTCACTGCACA
TCTGCAAAGGCTGGACTGCCAAAGAGAGGAGCTGCTCATCGCCCTCTTCTTCTTTTCCTTGATGGGTCTA
CTCTCGTCCTACCTGACCCAACGGGACACTGCGGAGCATCTGAAGGCTGTGGACATCTGTGCCGAGGTCC
TCACGTGCTTGGAAAGAAGGAAGGTGTCCTGGCTGGTGCTCTTCCAGTTGACAGAGAAAGATGCCAAGCT
GGGGCACCTCCTTCACTTGGCCCCAGATCAGCACACCAGGCTGCTACCACTTGCTTTCTACAGTCTCCTC
TCCTGCTTCAGTGAAGGGGCCGCTGTCAGGGAAGCAGCTTTCCTGCACGTTGCTGTTGACATGTACCTCA
AGCTGCTACAGCTCTTTGTGGATGGGGAAACCAGGCTCCAAGGGCACTCCGAGTCTCAGGGCAGCCCTGT
ACAACTGATAACAAAGGCACGTGTTTTTCTGCTGCAGCTAATACCTCAGTGCCCAAAACAGTGCTTCTCC
AACATGACAGAGCTGCTGGCTGGTCGAGGAGACTGTGACCCTGAGGTGAGCAACGCCCTCCGGCAGAGGC
AGCAGGCTGACCCCAGCTTTGACCTCTACCAGGAGCCTCAGCTGTTCTGA

Translation (1439 aa):
MPGSPARGAAMGGGPRGLRKTWTELLAGRVKKQKYDPEREQKLKDSALKLLRYHQNMHDLLLEVEEPQCK
RLRLSELIDRDSADASSDRSASFIRSAFRDQASRLGVPVGVLSAKVFARSVQQVCVEPSHPVLLSPEQSK
KLSSLLMIARHLLAQNMFSRLTFCQELWKAQNSLLLEAMWRLHTHSVVSLQELLQSHPDSEAMAMWLFRN
LRSLCEQIGASCPSPDTTEAMLSGLVQLLISRGFQGSSDPRRLVEPERLPQVATDVLQRMLAFSLDTLEA
DPQTTLDCQAVSGWIPIYSGHTCCGVVTENSLKSFFSHTLTQILTHKPVLKVSDAIQMQKEWSFAKTHHL
LTDLHCRVLATLGPEESVGRLQEVLEMQEVNWQHVLSCVSTLVVCFPEAQQLVKGWVASLMARAFESYHL
DSMVTAFLIVRQATLEGPYVFPSYADWFKESFGSSHGYHSCSKKTLVFLFKFLSDLVPWEAPRYMQVHIF
HPPLVPSKYHSLLTDYISLAKTRLADLKVSLENVGLYEDLSSPGDIAERESQAVQDVKKAIMVFEQTGKI
PMPVLEASIFRRPYYVSHFLPTLLAPRVLPEVPDPRVALIETLKRADKIPSSIYDAYRKACASAEKQQPE
NATSAQRTEADCAKEPLGLLTAALEELRALMTDPTQYSVISAQVAVVSEKLNAVLGHRNDGGSLQRAKIQ
LSVLPSTLQKQDQAVVDLLLTAFCQNLMAASSFVPPERQSPWAVLFVRTLCGHVLLPAVLTRLRQLLRHQ
GQSLSTSHVLGLAALAVHLGECRSMLPEVDPDVLAPSAGSLCVPDFLNSLLTCRTRDSLLFCMNFCTAAV
SYCLCKFSALRNCLSPGLIKKFQFVVLRLFPEARAPCAPEHAACVPWRPLYLPSADWQRAALSLWRRDSF
QELLKDKEFYLTYRDWVQLELEIQPEADVLSDMERHDFHQWAIYERYLPAPTALGGCGGDLEEACTVLVS
EIMDFHQSSRSYNHSEDSDLVLGGRTGNKDILSRLQEIALDLELDQGSAVPHGCSTPQSHFLFRVFRRRL
QALARPDSMATSLRRQQELLTCKRLLLCLPPSVLVGGPQAGQPISPNCGEFFSLVNSELRNFCCHGSVLT
SDITIHFFRGLLRVCLRSQDPALVANQTLTECQTKCPVILTSALLWWSSLEPVLCGRWMRCYQSPLPREL
RRLQEAREFASNFASASASPAPSPAWIAAAALHFAWRGVRKEDVTAHLQRLDCQREELLIALFFFSLMGL
LSSYLTQRDTAEHLKAVDICAEVLTCLERRKVSWLVLFQLTEKDAKLGHLLHLAPDQHTRLLPLAFYSLL
SCFSEGAAVREAAFLHVAVDMYLKLLQLFVDGETRLQGHSESQGSPVQLITKARVFLLQLIPQCPKQCFS
NMTELLAGRGDCDPEVSNALRQRQQADPSFDLYQEPQLF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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