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Report for CCDS17281.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17281.2 Public Mus musculus 3 Mecom 23 108 98 CCDS HistoryNCBI Gene:14013Re-query CCDS DB by CCDS ID:17281.2See the combined annotation on chromosome 3 in Sequence Viewer

Public Note for CCDS 17281.1
The coding region has been updated to represent an alternate 5' exon and and alternate shorter exon in the middle that is more supported by the available transcript and protein data. The update changes the protein length from 1032 aa to 718 aa. Longer variants are also present in mouse, but current mRNA evidence is partial.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 17281.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000172694.7 ENSMUSP00000134303.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000172694.7Link to Ensembl Protein Viewer:ENSMUSP00000134303.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000172694Re-query CCDS DB by Protein ID:ENSMUSP00000134303
Original member NCBI NM_007963.2 NP_031989.2 Updated not alive Link to Nucleotide Sequence:NM_007963.2Link to Protein Sequence:NP_031989.2Re-query CCDS DB by Nucleotide ID:NM_007963Re-query CCDS DB by Protein ID:NP_031989
Current member NCBI NM_007963.3 NP_031989.2 Accepted alive Link to Nucleotide Sequence:NM_007963.3Link to Protein Sequence:NP_031989.2Re-query CCDS DB by Nucleotide ID:NM_007963Re-query CCDS DB by Protein ID:NP_031989Link to BLAST:NP_031989.2

Chromosomal Locations for CCDS 17281.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 29952716 29952850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 29956306 29956489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 29957313 29957549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 29960973 29961117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 29963059 29963228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 29965449 29965526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 29966653 29966819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 29977259 29977346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 29979601 29979985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 29985341 29985494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 29987030 29987177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 29993486 29993702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 29997646 29997694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2157 nt):
ATGAAGAGTGAAGAGGACCCGCACGAACCCATGGCGCCTGACATCCACGAAGAACGGCAGCACCGCTGTG
AG
GACTGTGACCAGCTCTTTGAATCCAAGGCAGAGCTAGCCGATCACCAGAAGTTCCCATGCAGCACACC
T
CACTCGGCCTTCTCCATGGTGGAGGAGGACTTGCAACAAAACCTGGAGAGTGAGAGCGATCTCCGAGAG
ATC
CATGGCAACCAGGACTGTAAGGAATGTGACCGAGTTTTCCCCGATCTGCAAAGCTTGGAGAAGCACA
TG
CTGTCACATACTGAGGAGAGGGAATACAAGTGTGATCAGTGTCCCAAGGCATTTAACTGGAAGTCCAA
T
TTAATTCGCCACCAGATGTCACATGACAGTGGAAAGCACTATGAGTGTGAAAACTGTGCCAAGGTTTTC
ACG
GACCCTAGCAACCTTCAGCGACACATTCGATCTCAGCATGTTGGTGCCCGGGCTCATGCTTGCCCCG
AG
TGTGGTAAAACATTTGCCACTTCGTCAGGCCTCAAACAGCACAAGCACATCCACAGCAGTGTGAAGCC
C
TTTATCTCATTCTCTCAATCAATGTACCCATTTCCTGATAGAGACTTGAGGTCGTTACCTTTGAAAATG
GAG
CCCCAATCACCAAGTGAAGTTAAGAAACTGCAGAAGGGAAGCTCTGAGTCCCCTTTTGACCTCACCA
CT
AAGAGAAAGGATGAGAAGCCCTTGACTTCAGGCCCCTCGAAGCCTTCAGGAACACCAGCCACAAGCCA
A
GACCAGCCCCTGGATCTAAGTATGGGCAGTAGGGGTAGAGCCAGTGGGACAAAGTTGACTGAGCCTCGA
AAA
AACCATGTGTTTGGGGAAAAGAAAGGAAGCAACATGGATACTAGGCCATCTTCAGATGGCTCCTTGC
AG
CATGCCAGACCCACTCCCTTCTTCATGGACCCCATTTATAGAGTAGAGAAAAGAAAGTTAACTGACCC
G
CTTGAAGCTTTGAAAGAAAAATACTTGAGACCTTCTCCAGGATTCTTGTTTCACCCGCAAATGTCAGCA
ATT
GAGAACATGGCAGAAAAGCTGGAAAGCTTCAGCGCCCTCAAACCTGAGGCCAGCGAGCTCCTGCAGT
CC
GTGCCCTCCATGTTCAGCTTCCGAGCTCCTCCCAACACCCTGCCAGAGAACCTGCTGCGGAAGGGGAA
A
GAGCGCTACACCTGCAGGTACTGTGGCAAGATATTTCCAAGGTCTGCGAACCTAACACGGCACTTGAGA
ACC
CACACAGGAGAGCAACCTTACAGATGCAAATACTGTGATAGATCATTCAGCATTTCTTCCAACCTGC
AG
CGACATGTGCGCAACATCCACAACAAGGAGAAGCCATTTAAGTGTCATTTATGTGACAGATGTTTTGG
T
CAACAAACCAATCTTGACAGACACCTGAAGAAACATGAGAACGGCAACATGTCTGGGACGGCAACGTCC
TCG
CCTCACTCAGAGCTAGAAAGCGCAGGCGCAATCCTGGATGACAAAGAAGATGCGTACTTTACAGAGA
TC
CGCAATTTCATCGGGAACAGCAACCATGGTAGCCAGTCTCCTCGGAACATGGAAGAGAGGATGAATGG
C
AGTCACTTCAAGGATAAAAAGGCTTTGGCAACCAGCCAAAATTCAGATTTATTGGATGATGAAGAAGTA
GAA
GATGAGGTGTTGTTGGATGAGGAGGATGAAGACAATGATATTCCTGGAAAGCCCAGAAAGGAGCTAG
GG
GTGACTCGTTTAGACGAGGAGATCCCGGAGGATGACTACGAAGAAGCTGGTGCCCTGGAGATGAGCTG
T
AAGGCGTCCCCGGTGAGGTATAAAGAGGAAGACTATAAATCTGGCCTTTCTGCTCTAGATCACATAAGG
CAC
TTCACAGATAGCCTCAAAATGAGGGAAATGGAAGAGAATCAATACACTGACGCTGAGCTGTCCTCCA
TT
AGTTCTTCTCATGTGCCAGAGGAGCTTAAACAGACGTTACACAGAAAGTCCAAATCACAGGCATATGC
T
ATGATGTTGTCACTGTCTGACAAGGATTCCCTCCATCCCACCTCCCACAGTTCCTCCAACGTGTGGCAC
AGC
ATGGCAAGGGCTGCAGCAGAATCCAGTGCCATCCAGTCCATAAGCCATGTATGA


Translation (718 aa):
MKSEEDPHEPMAPDIHEERQHRCEDCDQLFESKAELADHQKFPCSTPHSAFSMVEEDLQQNLESESDLRE
I
HGNQDCKECDRVFPDLQ
SLEKHMLSHTEEREYKCDQCPKAFNWKSNLIRHQMSHDSGKHYECENCAKVF
T
DPSNLQRHIRSQHVGARAHACPECGKTFATSSGLKQHKHIHSSVKPFI
SFSQSMYPFPDRDLRSLPLKM
E
PQSPSEVKKLQKGSSESPFDLTTKRKDEKPLTSGPSKPSGTPATSQDQPLDLSMGSRGRASGTKLTEPR
K
NHVFGEKKGSNMDTRPSSDGSLQHARPTPFFMDPIY
RVEKRKLTDPLEALKEKYLRPSPGFLFHPQMSA
I
ENMAEKLESFSALKPEASELLQSVPSMFSFRAPPNTLPENLLRKGKERYTC
RYCGKIFPRSANLTRHLR
T
HTGEQPY
RCKYCDRSFSISSNLQRHVRNIHNKEKPFKCHLCDRCFGQQTNLDRHLKKHENGNMSGTATS
S
PHSELESAGAILDDKEDAYFTEIRNFIGNSNHGSQSPRNMEE
RMNGSHFKDKKALATSQNSDLLDDEEV
E
DEVLLDEEDEDNDIPGKPRKELGVTRLDEEIPEDDYEEAGALEMSCKASPV
RYKEEDYKSGLSALDHIR
H
FTDSLKMREMEENQYTDAELSSISSSHVPEELKQTLHRKSKSQ
AYAMMLSLSDKDSLHPTSHSSSNVWH
S
MARAAAESSAIQSISHV




Links Key
 Links to:   History report
  BLAST report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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