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Report for CCDS39677.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39677.1 Public Mus musculus 6 Etv6 23 108 98 CCDS HistoryNCBI Gene:14011Re-query CCDS DB by CCDS ID:39677.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39677.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000081028.12 ENSMUSP00000079818.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000081028.12Link to Ensembl Protein Viewer:ENSMUSP00000079818.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000081028Re-query CCDS DB by Protein ID:ENSMUSP00000079818
Original member Current member NCBI NM_007961.4 NP_031987.3 Accepted alive Link to Nucleotide Sequence:NM_007961.4Link to Protein Sequence:NP_031987.3Re-query CCDS DB by Nucleotide ID:NM_007961Re-query CCDS DB by Protein ID:NP_031987Link to BLAST:NP_031987.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031987.3 485 P97360 485 100% 0 0

Chromosomal Locations for CCDS 39677.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 134036106 134036138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 134137285 134137417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 134222865 134223029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 134233519 134233653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 134248274 134248804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 134261690 134261832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 134263019 134263119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 134266258 134266474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1458 nt):
ATGTCTGAGACTCCTGCTCAGTCTAGCATTAAGCAGGAACGAATTTCATACACGCCCCCAGAGAGTCCAG
TGGCAAGCCACCGTTCCTCGACTCCGCTTCATGTTCACACAGTGCCTCGAGCGCTCAGGATGGAGGAAGA
CTCGATCCACCTGCCAACACACCTGCGTTTGCAGCCGATTTACTGGAGCAGAGATGACGTAGCCCAGTGG
CTCAAGTGGGCAGAAAATGAGTTTTCTTTAAGGCCCATTGAGAGCAACAAGTTCGAAATGAATGGCAAGG
CCCTCCTGCTGCTGACCAAAGAGGATTTCCGCTACCGATCTCCTCATTCAGGCGACGTGCTCTATGAACT
CCTTCAGCATATCCTGAAGCAGAGGAAATCTCGAATGCTCTTCTCACCATTCTTCCCCCCTGGGGACTCT
ATCCACACCAAGCCAGAGGTCCTCCTGCATCAGAACCATGACGAAGATAACTGTGTCCAGAGGACACCCA
GGACGCCCGCGGAGAGCGTGCACCACAACCCTCCCACCATCGAACTCTTACATCGCCCTAGGTCACCCAT
CACCACAAACCACAGGCCTTCTCCTGACCCCGAACAGCAGCGGCCCCAGCGGTCCCCCCTAGACAACATG
AGCCGCCGCCTCTCGCCAGTGGAGAAAGCCCAGGGGCCCAGGCTACAGCAGGAGAACAACCACCAGGAAA
CGTACCCCCTGTCAGTGTCTCCTGTCGAGAATAATCACTGCCTGCCCTCAAGCCCCTGGCAGGAGAGCAC
TCGAGTGATCCAGCTGATGCCCAGCCCCATCATGCACCCTTTGATCCTGAACCCCCGGCACTCGCACTCG
GTGGACTTCAAACAGTCCCGGCACTCCGAGGATGGGATGAATCGGGAAGGGAAGCCCATCAACCTGTCTC
ATCGGGAGGACCTGGCTTACTTGAACCACATCATGGTCTCTATGTCCCCACCGGAAGAGCACGCCATGCC
CATTGGGAGAATAGCAGACTGTAGACTGCTTTGGGATTATGTCTATCAGTTGCTGTCTGACAGCCGGTAC
GAAAACTTCATCCGATGGGAGGACAAAGAATCCAAAATATTCCGGATAGTGGATCCCAACGGACTGGCTC
GACTCTGGGGAAACCATAAGAACAGAACAAACATGACCTATGAGAAAATGTCCAGAGCCCTGCGCCACTA
CTACAAACTAAACATTATCAGGAAGGAGCCCGGACAAAGGCTTTTGTTCAGGTTCATGAAAACCCCAGAT
GAGATCATGAGTGGCCGGACAGACCGTCTAGAACACCTCGAGTCTCAAGTGCTGGATGAACAAACGTACC
AAGAGGATGAACCTACCATAGCCTCACCGGTGGGCTGGCCAAGAGGAAACCTGCCCACGGGGACCGCAGG
AGGCGTGATGGAAGCAGGCGAGCTAGGGGTGGCTGTAAAGGAAGAGACCCGGGAATAG

Translation (485 aa):
MSETPAQSSIKQERISYTPPESPVASHRSSTPLHVHTVPRALRMEEDSIHLPTHLRLQPIYWSRDDVAQW
LKWAENEFSLRPIESNKFEMNGKALLLLTKEDFRYRSPHSGDVLYELLQHILKQRKSRMLFSPFFPPGDS
IHTKPEVLLHQNHDEDNCVQRTPRTPAESVHHNPPTIELLHRPRSPITTNHRPSPDPEQQRPQRSPLDNM
SRRLSPVEKAQGPRLQQENNHQETYPLSVSPVENNHCLPSSPWQESTRVIQLMPSPIMHPLILNPRHSHS
VDFKQSRHSEDGMNREGKPINLSHREDLAYLNHIMVSMSPPEEHAMPIGRIADCRLLWDYVYQLLSDSRY
ENFIRWEDKESKIFRIVDPNGLARLWGNHKNRTNMTYEKMSRALRHYYKLNIIRKEPGQRLLFRFMKTPD
EIMSGRTDRLEHLESQVLDEQTYQEDEPTIASPVGWPRGNLPTGTAGGVMEAGELGVAVKEETRE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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