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Report for CCDS29118.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29118.1 Public Mus musculus 18 Ercc3 23 108 98 CCDS HistoryNCBI Gene:13872Re-query CCDS DB by CCDS ID:29118.1See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29118.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025241.6 ENSMUSP00000025241.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025241.6Link to Ensembl Protein Viewer:ENSMUSP00000025241.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000025241Re-query CCDS DB by Protein ID:ENSMUSP00000025241
Original member Current member NCBI NM_133658.2 NP_598419.1 Accepted alive Link to Nucleotide Sequence:NM_133658.2Link to Protein Sequence:NP_598419.1Re-query CCDS DB by Nucleotide ID:NM_133658Re-query CCDS DB by Protein ID:NP_598419Link to BLAST:NP_598419.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598419.1 783 P49135 783 100% 0 0

Chromosomal Locations for CCDS 29118.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 32240394 32240421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 32240630 32240835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 32242964 32243200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 32244799 32244848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 32245489 32245624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 32245752 32245919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 32246567 32246771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 32248163 32248477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 32254081 32254265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 32257190 32257392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 32261302 32261398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 32264548 32264665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 32265618 32265736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 32267164 32267316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 32269758 32269889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2352 nt):
ATGGGCAAAAGAGATCGAGTGGACCGCGACAAAAAGAAATCCAAGAAGAGGCAGTATGAAGAGGAAGAGG
AAGACGAAGACGACATTCCTGGGAACGAGTCTCAGGAGGCGGTGCCCTCCGCCGCTGGGAAACAGGTGGA
CGAGTCCAGCACCAAAGTGGATGAGTATGGAGCAAAGGACTACAGACAGCAGATGCCACTAAAGGGTGAC
CATACCTCCAGGCCCCTCTGGGTGGCTCCTGATGGCCACATTTTCTTGGAAGCCTTCTCTCCAGTTTACA
AATATGCCCAAGACTTCCTGGTGGCAATTGCAGAGCCGGTGTGCCGGCCTACTCATGTACATGAATACAA
GCTAACCGCCTACTCCCTCTATGCAGCGGTCAGTGTTGGGCTGCAAACCAGTGACATTACTGAGTACCTC
AGAAAGCTCAGTAAGACTGGAGTTCCTGATGGAATTATCCAGTTTATTAAGCTGTGCACTGTCAGCTATG
GGAAGGTCAAGCTGGTCCTCAAGCACAACAGGTACTTTGTTGAAAGTTCCCACCCTGATGTTATCCAGCA
TCTTCTTCAAGACCCAGTGATCCGGGAATGTCGCTTGAGGAACGCCGAGGGCGAGGCCACCGAACTCATC
ACAGAGACTTTTACAAGCAAATCTGCTATTTCTAAGACGGCGGCGGAAGGCAGTGGCGGGCCTTCTACTT
CGCAGGGGGTAGATGCACAGGCCACGTCTGACATACCCAAAGACCTGTTTGATTTTTATGAGCAAATGGA
CAAGGATGAGGAGGAGGAGGAAGAGACACAGACAGTGTCCTTTGAAGTTAAGCAGGAAATGATCGAGGAG
CTGCAGAAGCGCTGCATCTGCTTAGAGTACCCGCTGCTGGCAGAGTATGACTTCCGGAATGACACTCTCA
ATCCTGACATCAACATTGACCTGAAGCCCACAGCCGTACTCAGACCCTATCAGGAGAAGAGCCTGCGGAA
GATGTTTGGGAACGGACGAGCACGCTCAGGAGTCATTGTTCTTCCCTGTGGTGCTGGGAAGTCCCTGGTC
GGCGTGACTGCCGCATGCACTGTCAGAAAGCGCTGTCTCGTCCTGGGCAACTCGGCTGTGTCTGTGGAGC
AGTGGAAAGCCCAGTTTAAGATGTGGTCAACCATCGATGACAGCCAGATCTGCCGCTTCACCTCAGATGC
CAAGGACAAGCCCATCGGCTGCTCCGTTGCCATTAGCACTTACTCTATGCTGGGCCACACCACCAAAAGG
TCCTGGGAAGCTGAGAGAGTCATGGAGTGGCTCAAAACCCAGGAGTGGGGCCTCATGATCCTTGACGAGG
TGCACACCATTCCAGCCAGGATGTTCCGGCGGGTTCTGACTATTGTGCAGGCGCACTGTAAGCTTGGTTT
GACTGCAACCCTTGTCCGGGAAGATGACAAAATTGTTGACTTAAATTTCCTGATTGGGCCCAAGCTCTAT
GAAGCCAACTGGATGGAGCTGCAGAACAATGGGTACATCGCTAAAGTCCAGTGTGCTGAGGTTTGGTGCC
CGATGTCTCCCGAGTTCTACCGAGAGTATGTGGCAATCAAAACAAAGAAACGGATCCTGTTGTACACCAT
GAATCCCAACAAATTCAGAGCCTGCCAGTTTCTGATCAAGTTTCATGAAAGGAGGAATGACAAGATTATT
GTCTTTGCTGACAACGTATTTGCCTTGAAGGAATATGCCATTCGGCTGAACAAACCTTATATCTACGGGC
CCACGTCCCAGGGAGAACGTATGCAGATTCTCCAGAACTTCAAGCACAACCCCAAAATCAACACCATCTT
CATCTCCAAGGTTGGTGACACATCCTTTGATCTGCCAGAAGCCAATGTCCTCATTCAGATCTCTTCCCAT
GGTGGCTCCCGACGGCAGGAAGCCCAGAGACTGGGACGGGTACTCAGAGCCAAGAAAGGGATGGTCGCAG
AGGAATACAATGCCTTTTTCTACTCCCTGGTATCTCAGGACACACAGGAAATGGCTTATTCTACCAAGCG
ACAGAGATTCCTAGTGGATCAAGGTTACAGCTTTAAGGTAATCACAAAGCTAGCTGGCATGGAGGAAGAG
GAGCTGGCGTTCTCCACCAAAGAGGAGCAGCAGCAGCTCCTGCAGAAGGTGCTGGCAGCCACCGACTTGG
ATGCAGAGGAGGAAGTGGTGGCTGGAGAGTTTGGCTCTAGATCTGGCCAGGCATCCCGACGCTGTGGCAC
CATGAGCTCCCTGTCAGGCGCAGACGACACCGTGTACATGGAGTACCACTCCTCCCGAAGCAAGGCCTCC
AGCAAGCACGTGCACCCGCTTTTCAAACGCTTCAGGAAGTGA

Translation (783 aa):
MGKRDRVDRDKKKSKKRQYEEEEEDEDDIPGNESQEAVPSAAGKQVDESSTKVDEYGAKDYRQQMPLKGD
HTSRPLWVAPDGHIFLEAFSPVYKYAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGLQTSDITEYL
RKLSKTGVPDGIIQFIKLCTVSYGKVKLVLKHNRYFVESSHPDVIQHLLQDPVIRECRLRNAEGEATELI
TETFTSKSAISKTAAEGSGGPSTSQGVDAQATSDIPKDLFDFYEQMDKDEEEEEETQTVSFEVKQEMIEE
LQKRCICLEYPLLAEYDFRNDTLNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLV
GVTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGCSVAISTYSMLGHTTKR
SWEAERVMEWLKTQEWGLMILDEVHTIPARMFRRVLTIVQAHCKLGLTATLVREDDKIVDLNFLIGPKLY
EANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNKFRACQFLIKFHERRNDKII
VFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSH
GGSRRQEAQRLGRVLRAKKGMVAEEYNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEEE
ELAFSTKEEQQQLLQKVLAATDLDAEEEVVAGEFGSRSGQASRRCGTMSSLSGADDTVYMEYHSSRSKAS
SKHVHPLFKRFRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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