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Report for CCDS28260.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28260.2 Public Mus musculus 16 Epha6 23 108 98 CCDS HistoryNCBI Gene:13840Re-query CCDS DB by CCDS ID:28260.2See the combined annotation on chromosome 16 in Sequence Viewer

Public Note for CCDS 28260.1
The coding region has been updated to extend the N-terminus to one that is more supported by available transcript and protein data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 28260.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000068860.12 ENSMUSP00000066734.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000068860.12Link to Ensembl Protein Viewer:ENSMUSP00000066734.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000068860Re-query CCDS DB by Protein ID:ENSMUSP00000066734
Original member Current member NCBI NM_007938.2 NP_031964.2 Accepted alive Link to Nucleotide Sequence:NM_007938.2Link to Protein Sequence:NP_031964.2Re-query CCDS DB by Nucleotide ID:NM_007938Re-query CCDS DB by Protein ID:NP_031964Link to BLAST:NP_031964.2

Chromosomal Locations for CCDS 28260.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 59654020 59654134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 59655724 59655873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 59666555 59666748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 59682609 59682758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 59775543 59775752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 59818936 59818997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 59839242 59839367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 59915784 59915969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 59954652 59954777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 59956869 59956939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 59960334 59960442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 60005537 60005699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 60060103 60060227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 60205472 60205807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 60220981 60221136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 60424721 60425384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 60526449 60526513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 60604864 60605248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3393 nt):
ATGCAATTCCCCTCGCCTCCAGCCGCCAGGAGCTCCCCGGCGGCGCAGGCAGCATCGTCCCCGCAAGCAG
CTGCTCCAGCACCTGGGCAGCCTGGACCCTCGTGCCCTGCGCACCGGGCCTCGCGCGGGGGGCGCCCCGG
GACTTCCCCTGCGGACCGGGTGGAGGAGGAAGAGGAGGAGGAGGAAGAAGAAGAGAGCTTGGTTCAGGAC
CCCCACGCTACTAGGAACACCTGGCTGCGCTGCTGCCACTTCTTTTTAAGGAGGAGAAGAGAACCAACCA
GAGCCATGGGGGGCTGCGAAGTCCGGGAATTTCTTTTGCAATTTGGTTTCTTCTTGCCCCTGCTAACGGC
TTGGACCGGCGACTGCAGTCACGTCTCCAACCAAGTTGTGTTGCTTGATACAACCACAGTGATGGGAGAA
CTAGGATGGAAAACATATCCATTAAATGGGTGGGATGCCATTACTGAAATGGATGAACACAATAGGCCCA
TACATACATACCAGGTATGCAATGTCATGGAACCAAACCAGAACAACTGGCTTCGTACTAACTGGATCTC
TCGTGATGCTGCACAGAAAATTTATGTGGAAATGAAGTTCACACTGAGGGATTGTAACAGCATCCCATGG
GTCTTGGGGACTTGTAAAGAAACCTTTAACCTGTATTATATAGAATCCGATGAATCCCATGGGACAAAAT
TCAAGCCAAGCCAATATATAAAGATCGACACAATTGCTGCTGATGAGAGTTTTACTCAGATGGATTTGGG
TGACCGCATCCTTAAACTCAACACTGAAATCCGTGAGGTGGGGCCTATAGAAAGGAAAGGATTTTATTTG
GCTTTTCAAGATATTGGAGCATGCATCGCTCTGGTCTCAGTCCGAGTTTTCTACAAAAAATGCCCCTTCA
CCGTGCGGAACTTGGCTATGTTTCCTGATACCATCCCAAGGGTTGATTCTTCCTCTTTGGTTGAAGTGCG
GGGCTCATGTGTAAAGAGTGCTGAGGAGCGAGATACTCCTAAACTCTACTGTGGAGCTGATGGGGATTGG
CTTGTTCCTCTTGGAAGGTGTATCTGCAGTACAGGGTATGAAGAAATCGAGGGTTCTTGCCATGCTTGCA
GACCAGGATTCTACAAAGCATTTGCTGGGAACACAAAATGTTCCAAATGCCCTCCACACAGCTCAACCTA
CGTGGAAGCAACGTCAGTCTGTCATTGTGAAAAGGGTTACTTCCGGGCAGAAAAAGACCCACCTTCTATG
GCATGCACTAGACCACCTTCAGCTCCTAGAAATGTGGCTTTTAACATCAATGAAACAGCCCTTATTTTGG
AATGGAGCCCACCCAGTGACACAGGAGGGAGAAAAGATCTCACATACAGTGTAATCTGTAAGAAATGTGG
TTTAGACACTACCCAGTGTGAGGACTGTGGTGGAGGACTCCGCTTCATCCCAAGACACACTGGACTGATC
AACAATTCTGTGGTAGTACTGGACTTTGTGTCTCACGTCAATTATACCTTTGAAATAGAAGCCATGAATG
GAGTTTCTGAGTTGAGCATCTCTCCCAAGCCATTCACAGCTATTACAGTGACTACAGATCACGATGCACC
TTCTCTGATTGGTATGATGAGAAAGGACTGGGCATCTCAGAACAGCCTTGCTCTATCGTGGCAAGCACCT
GCATTTTCCAATGGAGCTATTCTGGACTATGAGATCAAGTACTACGAGAAAGAGCATGAGCAGCTCACCT
ATTCCTCCACGAGGTCCAAGGCCCCAAGCGTCATCGTCACGGGCCTCAAGCCCGCCACCACGTACATATT
TCACATCCGAGTGAGGACGGCGACAGGCTACAGTGGCTACAGTCAGAAGTTTGAATTTGAAACAGGAGAT
GAAACTTCTGACATGGCGGCAGAACAAGGGCAGATTCTGGTCATAGCCACTGCAGCCGTCGGGGGATTCA
CTCTCTTAGTCATCCTCACCCTGTTCTTCCTCATCACTGGGAGGTGTCAATGGTACATAAAGGCCAAAAT
GAAGTCAGAAGAGAAGAGAAGAACTCACTTACAGAACGGCCACCTGCGCTTCCCGGGAATTAAAACATAC
ATTGATCCAGACACCTATGAAGACCCATCCCTAGCAGTCCACGAATTTGCAAAAGAGATTGATCCTTCAA
GAATTCGCATTGAGAGAGTGATTGGAGCAGGTGAATTTGGAGAAGTCTGCAGTGGGCGTTTGAAGACACC
AGGGAAAAGGGAGATCCCAGTTGCAATTAAAACATTGAAAGGTGGCCACATGGACCGACAAAGAAGAGAT
TTTCTAAGAGAAGCTAGCATCATGGGTCAGTTTGACCACCCAAACATCATTCGCCTAGAAGGTGTTGTCA
CTAAAAGATCCTTCCCGGCGATTGGGGTGGAAGCCTTCTGCCCCAGCTTCCTAAGGGCTGGGTTTTTAAA
TGGCATCCAAGCGCCACATCCAGTGACTGCAGGAGGCTCTCTGCCCCCCAGGATTCCTGCAGGTCGGCCA
GTAATGATCGTAGTAGAGTATATGGAGAATGGATCACTGGACTCCTTTTTGCGGAAGCATGATGGCCACT
TCACCGTCATCCAGTTGGTCGGCATGCTGAGGGGCATCGCGTCAGGCATGAAGTATCTTTCTGACATGGG
ATATGTTCATCGAGATCTTGCCGCGAGGAACATACTGGTGAACAGCAACTTAGTATGCAAGGTCTCTGAT
TTTGGTCTCTCCCGAGTGCTGGAAGATGATCCAGAAGCAGCTTATACAACAACGGGAGGGAAAATCCCTA
TACGGTGGACAGCCCCAGAAGCTATTGCTTACAGAAAGTTCTCCTCAGCCAGTGACGCGTGGAGCTACGG
GATTGTCATGTGGGAGGTGATGTCCTATGGAGAGAGACCGTACTGGGAAATGTCCAACCAGGATGTTATC
TTGTCCATTGAAGAAGGTTACCGACTTCCTGCTCCGATGGGCTGCCCACCGTCTCTGCACCAGCTGATGC
TCCACTGCTGGCAGAAGGAGAGAAACCACAGGCCAAAATTCACTGACATCGTCAGCTTCCTTGACAAACT
GATCCGCAACCCCAGTGCCCTTCACACGCTGGTGGAGGACATCCTTGTAATGCCAGAATCCCCTGGTGAT
GTTCCTGAATATCCATTGTTTGTCACAGTAGGTGACTGGCTGGATTCTATAAAGATGGGGCAATACAAGA
GTAACTTCATGGCAGCGGGTTTTACAACGTTTGATCTGATTTCACGAATGAGCATCGATGATATTAGGCG
AATTGGAGTCATTCTCATTGGACATCAGAGACGAATAGTCAGCAGCATACAAACTTTACGTTTACATATG
ATGCACATACAGGAAAAAGGATTTCATGTATGA

Translation (1130 aa):
MQFPSPPAARSSPAAQAASSPQAAAPAPGQPGPSCPAHRASRGGRPGTSPADRVEEEEEEEEEEESLVQD
PHATRNTWLRCCHFFLRRRREPTRAMGGCEVREFLLQFGFFLPLLTAWTGDCSHVSNQVVLLDTTTVMGE
LGWKTYPLNGWDAITEMDEHNRPIHTYQVCNVMEPNQNNWLRTNWISRDAAQKIYVEMKFTLRDCNSIPW
VLGTCKETFNLYYIESDESHGTKFKPSQYIKIDTIAADESFTQMDLGDRILKLNTEIREVGPIERKGFYL
AFQDIGACIALVSVRVFYKKCPFTVRNLAMFPDTIPRVDSSSLVEVRGSCVKSAEERDTPKLYCGADGDW
LVPLGRCICSTGYEEIEGSCHACRPGFYKAFAGNTKCSKCPPHSSTYVEATSVCHCEKGYFRAEKDPPSM
ACTRPPSAPRNVAFNINETALILEWSPPSDTGGRKDLTYSVICKKCGLDTTQCEDCGGGLRFIPRHTGLI
NNSVVVLDFVSHVNYTFEIEAMNGVSELSISPKPFTAITVTTDHDAPSLIGMMRKDWASQNSLALSWQAP
AFSNGAILDYEIKYYEKEHEQLTYSSTRSKAPSVIVTGLKPATTYIFHIRVRTATGYSGYSQKFEFETGD
ETSDMAAEQGQILVIATAAVGGFTLLVILTLFFLITGRCQWYIKAKMKSEEKRRTHLQNGHLRFPGIKTY
IDPDTYEDPSLAVHEFAKEIDPSRIRIERVIGAGEFGEVCSGRLKTPGKREIPVAIKTLKGGHMDRQRRD
FLREASIMGQFDHPNIIRLEGVVTKRSFPAIGVEAFCPSFLRAGFLNGIQAPHPVTAGGSLPPRIPAGRP
VMIVVEYMENGSLDSFLRKHDGHFTVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILVNSNLVCKVSD
FGLSRVLEDDPEAAYTTTGGKIPIRWTAPEAIAYRKFSSASDAWSYGIVMWEVMSYGERPYWEMSNQDVI
LSIEEGYRLPAPMGCPPSLHQLMLHCWQKERNHRPKFTDIVSFLDKLIRNPSALHTLVEDILVMPESPGD
VPEYPLFVTVGDWLDSIKMGQYKSNFMAAGFTTFDLISRMSIDDIRRIGVILIGHQRRIVSSIQTLRLHM
MHIQEKGFHV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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