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Report for CCDS22973.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22973.2 Public Mus musculus 9 Ei24 23 108 98 CCDS HistoryNCBI Gene:13663Re-query CCDS DB by CCDS ID:22973.2See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 22973.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000163192.10 ENSMUSP00000132270.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000163192.10Link to Ensembl Protein Viewer:ENSMUSP00000132270.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000163192Re-query CCDS DB by Protein ID:ENSMUSP00000132270
Original member Current member EBI ENSMUST00000238932.1 ENSMUSP00000159090.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000238932.1Link to Ensembl Protein Viewer:ENSMUSP00000159090.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000238932Re-query CCDS DB by Protein ID:ENSMUSP00000159090
Original member Current member NCBI NM_001199494.2 NP_001186423.2 Accepted alive Link to Nucleotide Sequence:NM_001199494.2Link to Protein Sequence:NP_001186423.2Re-query CCDS DB by Nucleotide ID:NM_001199494Re-query CCDS DB by Protein ID:NP_001186423Link to BLAST:NP_001186423.2
Original member Current member NCBI NM_007915.6 NP_031941.2 Accepted alive Link to Nucleotide Sequence:NM_007915.6Link to Protein Sequence:NP_031941.2Re-query CCDS DB by Nucleotide ID:NM_007915Re-query CCDS DB by Protein ID:NP_031941Link to BLAST:NP_031941.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001186423.2 340 Q61070 340 100% 0 0
NP_031941.2 340 Q61070 340 100% 0 0

Chromosomal Locations for CCDS 22973.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 36780107 36780269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 36782341 36782415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 36782733 36782844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 36784468 36784579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 36785533 36785652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 36785936 36786060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 36786483 36786549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 36788193 36788253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 36789780 36789925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 36793240 36793281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1023 nt):
ATGGCTGACAGTGTCAAAACCTTTCTGCAGGACCTTGGCAGGGGAATCAAAGACTCCATCTGGGGCATCT
GTACCATCTCAAAGCTAGATGCTCGGATCCAGCAGAAGAGAGAGGAACAGCGTCGAAGAAGGGCAAGTAG
CCTCTTGGCCCAGAGGAGACCCCAGAGTGTAGAGCGGAAGCAAGAGAGTGAACCACGTATTGTTAGTAGA
ATTTTCCAGTGTTGTGCTTGGAATGGTGGAGTATTCTGGTTCAGTCTCCTCTTGTTTTATCGAGTGTTTA
TTCCTGTACTTCAGTCAGTAACAGCCCGGATTATTGGAGATCCATCACTTCATGGAGATGTTTGGTCATG
GCTGGAATTCTTCCTCACATCAATTTTCAGTGCTCTTTGGGTGCTCCCCCTGTTTGTGCTTAGCAAAGTT
GTGAATGCCATTTGGTTCCAAGATATAGCTGACTTGGCATTTGAAGTATCAGGGAGGAAACCTCATCCAT
TCCCCAGTGTCAGCAAAATAATTGCTGACATGCTCTTCAACCTTTTGCTACAGGCACTTTTCCTTATTCA
GGGGATGTTTGTGAGTCTCTTCCCCATCCATCTTGTGGGTCAGCTGGTTAGTCTGCTGCATATGTCTCTT
CTCTATTCACTGTACTGCTTTGAGTACCGTTGGTTCAACAAAGGAATTGAAATGCACCAGCGATTGTCGA
ACATAGAAAGGAATTGGCCTTACTACTTTGGGTTTGGCTTGCCCTTGGCTTTCCTCACAGCAATGCAATC
CTCCTACATTATCAGTGGCTGCCTCTTTTCTATCCTGTTTCCTTTATTCATCATCAGCGCCAATGAAGCA
AAGACTCCTGGAAAAGCATATCTTTTCCAGTTGCGCCTATTCTCCTTGGTGGTCTTTTTAAGCAACAGAC
TTTTCCACAAGACCGTCTACCTGCAGTCAGCCCTGAGCAGCTCGTCCTCTGCAGAGAAATTCCCTTCGCC
ACATCCTTCTCCTGCCAAACTGAAAGCTGCTGCAGGCCACTGA

Translation (340 aa):
MADSVKTFLQDLGRGIKDSIWGICTISKLDARIQQKREEQRRRRASSLLAQRRPQSVERKQESEPRIVSR
IFQCCAWNGGVFWFSLLLFYRVFIPVLQSVTARIIGDPSLHGDVWSWLEFFLTSIFSALWVLPLFVLSKV
VNAIWFQDIADLAFEVSGRKPHPFPSVSKIIADMLFNLLLQALFLIQGMFVSLFPIHLVGQLVSLLHMSL
LYSLYCFEYRWFNKGIEMHQRLSNIERNWPYYFGFGLPLAFLTAMQSSYIISGCLFSILFPLFIISANEA
KTPGKAYLFQLRLFSLVVFLSNRLFHKTVYLQSALSSSSSAEKFPSPHPSPAKLKAAAGH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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