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Report for CCDS50403.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50403.1 Public Mus musculus 19 Tmc1 23 108 98 CCDS HistoryNCBI Gene:13409Re-query CCDS DB by CCDS ID:50403.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50403.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000039500.3 ENSMUSP00000040859.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000039500.3Link to Ensembl Protein Viewer:ENSMUSP00000040859.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000039500Re-query CCDS DB by Protein ID:ENSMUSP00000040859
Original member Current member NCBI NM_028953.2 NP_083229.1 Accepted alive Link to Nucleotide Sequence:NM_028953.2Link to Protein Sequence:NP_083229.1Re-query CCDS DB by Nucleotide ID:NM_028953Re-query CCDS DB by Protein ID:NP_083229Link to BLAST:NP_083229.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083229.1 757 Q8R4P5-1 757 100% 0 0

Chromosomal Locations for CCDS 50403.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 20785094 20785116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 20789585 20789636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 20789792 20789870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 20795516 20795641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 20799000 20799239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 20804599 20804666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 20816110 20816238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 20823978 20824148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 20824275 20824454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 20826506 20826700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 20827653 20827797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 20832351 20832493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 20856675 20856773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 20859005 20859111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 20868341 20868422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 20870398 20870488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 20900786 20900914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 20906860 20907022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 20913503 20913550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 20940905 20940908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2274 nt):
ATGTTGCAAATCCAAGTGGAGGAGAAAGAAGAGGATACAGAGGAAAGCTCAAGTGAAGAAGAAGAAGATA
AGCTACCCAGAAGAGAGAGCTTGAGACCAAAGAGGAAACGGACCAGAGATGTCATCAATGAGGATGACCC
AGAACCGGAGCCGGAGGATGAAGAAACAAGAAAGGCAAGAGAAAAAGAAAGGCGGAGGAGGCTGCGGAGA
GGAGCGGAAGAAGAAGAAGAAATTGATGAAGAGGAATTAGAACGGTTAAAAGCACTGCTCGATGAGAATA
GACAAATGATCGCTACTGTCAAATGTAAACCTTGGAAAATGGAGAAGAAAATTGAAGTTCTCAAGGAAGC
AAAGAAATTTGTGAGTGAGAATGAAGGCGCTCTTGGGAAAGGAAAGGGAAAGAAGTGGTTTGCATTTAAG
ATGATGATGGCCAAGAAATGGGCAAAATTCCTCCGAGATTTTGAGAACTTCAAAGCGGCTTGCGTCCCAT
GGGAAAACAAAATCAAGGCAATTGAAAGTCAGTTTGGTTCCTCAGTGGCCTCGTACTTCCTGTTCCTCAG
GTGGATGTACGGCGTCAACATGGTTCTCTTTGTGTTGACCTTCAGCCTCATCATGTTACCGGAGTACCTC
TGGGGTTTACCGTACGGCAGCTTACCTAGGAAAACAGTCCCAAGAGCTGAAGAAGCATCTGCAGCCAACT
TTGGTGTGTTGTATGACTTCAATGGCCTGGCGCAGTACTCTGTCCTCTTTTATGGCTATTACGACAATAA
ACGCACGATCGGATGGCTGAATTTCCGGCTACCTCTTTCCTACTTCCTGGTGGGGATTATGTGCATTGGA
TACAGCTTCCTGGTTGTCCTCAAAGCGATGACCAAAAATATTGGTGACGATGGTGGTGGCGATGACAACA
CTTTCAACTTCAGCTGGAAGGTGTTCTGTAGCTGGGACTATCTGATTGGTAACCCTGAAACAGCCGACAA
CAAGTTTAACTCTATCACGATGAACTTTAAGGAAGCCATCATAGAAGAGAGAGCCGCACAGGTGGAGGAG
AACATCCACCTCATCAGATTTCTGAGGTTTCTCGCTAACTTCTTCGTGTTCCTCACACTTGGTGCAAGTG
GATACCTCATCTTTTGGGCTGTGAAGCGATCCCAGGAGTTCGCCCAGCAAGATCCTGACACCCTTGGGTG
GTGGGAAAAAAATGAAATGAACATGGTAATGTCCCTCCTGGGGATGTTCTGTCCCACCCTGTTTGACTTA
TTTGCTGAACTGGAAGATTACCATCCTCTCATTGCTCTGAAGTGGCTCCTGGGGCGCATTTTTGCTCTTC
TTCTAGGCAACTTGTATGTATTCATTCTCGCCTTGATGGATGAGATTAACAACAAGATTGAAGAGGAGAA
GCTTGTGAAGGCCAATATTACCCTGTGGGAAGCCAACATGATTAAGGCTTACAATGAATCTCTCTCTGGG
CTCTCTGGGAACACCACAGGAGCACCCTTTTTCGTTCATCCTGCAGATGTCCCTCGCGGTCCCTGCTGGG
AAACAATGGTGGGGCAGGAATTCGTGCGTCTCACCGTTTCTGACGTCCTGACCACTTACGTCACGATCCT
CATTGGCGACTTCCTCAGAGCATGTTTCGTGAGGTTCTGCAATTACTGCTGGTGCTGGGACTTAGAATAT
GGATATCCTTCATACACAGAATTCGACATCAGTGGCAACGTCCTCGCTCTGATCTTCAACCAAGGCATGA
TCTGGATGGGCTCCTTCTTCGCTCCTAGCCTCCCGGGCATCAACATCCTCCGTCTCCACACATCCATGTA
TTTCCAGTGCTGGGCTGTGATGTGCTGCAATGTTCCCGAGGCCAGGGTGTTCAAAGCTTCCAGATCCAAC
AACTTCTACCTCGGCATGCTGCTACTCATCCTCTTCCTGTCCACCATGCCGGTCCTGTACATGATCGTCT
CCCTCCCGCCATCTTTTGATTGTGGGCCCTTCAGTGGTAAAAACAGGATGTTTGAAGTCATCGGTGAGAC
CCTGGAACATGACTTCCCAAGCTGGATGGCGAAGATCCTGAGGCAGCTTTCTAACCCCGGCCTTGTCATT
GCTGTCATTCTGGTGATGGTCCTGACCATCTATTATCTCAATGCTACTGCCAAGGGCCAGAAAGCAGCGA
ATCTGGACCTCAAAAAGAAGATGAAACAGCAAGCTTTGGAGAACAAAATGCGAAACAAGAAAATGGCAGC
GGCTCGAGCAGCTGCAGCTGCTGGTGGCCAGTAA

Translation (757 aa):
MLQIQVEEKEEDTEESSSEEEEDKLPRRESLRPKRKRTRDVINEDDPEPEPEDEETRKAREKERRRRLRR
GAEEEEEIDEEELERLKALLDENRQMIATVKCKPWKMEKKIEVLKEAKKFVSENEGALGKGKGKKWFAFK
MMMAKKWAKFLRDFENFKAACVPWENKIKAIESQFGSSVASYFLFLRWMYGVNMVLFVLTFSLIMLPEYL
WGLPYGSLPRKTVPRAEEASAANFGVLYDFNGLAQYSVLFYGYYDNKRTIGWLNFRLPLSYFLVGIMCIG
YSFLVVLKAMTKNIGDDGGGDDNTFNFSWKVFCSWDYLIGNPETADNKFNSITMNFKEAIIEERAAQVEE
NIHLIRFLRFLANFFVFLTLGASGYLIFWAVKRSQEFAQQDPDTLGWWEKNEMNMVMSLLGMFCPTLFDL
FAELEDYHPLIALKWLLGRIFALLLGNLYVFILALMDEINNKIEEEKLVKANITLWEANMIKAYNESLSG
LSGNTTGAPFFVHPADVPRGPCWETMVGQEFVRLTVSDVLTTYVTILIGDFLRACFVRFCNYCWCWDLEY
GYPSYTEFDISGNVLALIFNQGMIWMGSFFAPSLPGINILRLHTSMYFQCWAVMCCNVPEARVFKASRSN
NFYLGMLLLILFLSTMPVLYMIVSLPPSFDCGPFSGKNRMFEVIGETLEHDFPSWMAKILRQLSNPGLVI
AVILVMVLTIYYLNATAKGQKAANLDLKKKMKQQALENKMRNKKMAAARAAAAAGGQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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