NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS18436.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18436.1 Public Mus musculus 4 Dio1 23 108 98 CCDS HistoryNCBI Gene:13370Re-query CCDS DB by CCDS ID:18436.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)


Attributes
Contains selenocysteine

Sequence IDs included in CCDS 18436.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000082426.9 ENSMUSP00000081007.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000082426.9Link to Ensembl Protein Viewer:ENSMUSP00000081007.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000082426Re-query CCDS DB by Protein ID:ENSMUSP00000081007
Original member Current member NCBI NM_007860.4 NP_031886.3 Accepted alive Link to Nucleotide Sequence:NM_007860.4Link to Protein Sequence:NP_031886.3Re-query CCDS DB by Nucleotide ID:NM_007860Re-query CCDS DB by Protein ID:NP_031886Link to BLAST:NP_031886.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031886.3 257 Q61153 257 99.6109% 0 1

Chromosomal Locations for CCDS 18436.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 107292330 107292422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 107293749 107293948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 107297597 107297740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 107306782 107307118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. This works on the replacement symbol in the Translation Exceptions section also.

Translation Exceptions:
replace the symbol * (codon TGA) with U at amino acid position 126

Nucleotide Sequence (774 nt):
ATGGGGCTGCCCCAGCTATGGCTGTGGCTGAAGCGGCTTGTGATATTCCTGCAGGTGGCCTTGGAGGTGG
CTGTAGGCAAGGTGCTAATGACGCTGTTCCCAGGGAGAGTCAAACAGAGCATCCTGGCCATGGGCCAGAA
GACCGGGATGGCCAGGAACCCCCGATTCGCCCCTGACAACTGGGTCCCCACCTTCTTCAGCATCCAGTAC
TTCTGGTTTGTCCTGAAGGTCCGCTGGCAGAGACTGGAAGACAGGGCTGAGTTTGGGGGGCTGGCCCCCA
ACTGCACCGTGGTCTGCCTCTCAGGACAGAAGTGCAACATCTGGGATTTCATTCAAGGCAGCAGGCCCCT
GGTGTTGAACTTTGGCAGTTGCACCTGACCTTCATTTCTTCTCAAATTTGACCAGTTCAAGAGACTCGTA
GATGACTTTGCCTCCACAGCCGATTTCCTCATCATTTACATTGAAGAAGCTCACGCCACAGATGGCTGGG
CTTTTAAGAACAACGTGGACATCCGGCAGCACCGGAGCCTCCAGGAGCGCGTGCGGGCAGCCCGCATGCT
GCTGGCCAGGAGCCCCCAGTGCCCTGTGGTGGTGGACACAATGCAGAACCAGAGCAGCCAGCTCTACGCG
GCCCTGCCTGAGAGGCTCTACGTGATACAGGAGGGCAGGATCTGCTACAAGGGTAAAGCTGGCCCTTGGA
ACTACAATCCTGAGGAAGTCCGAGCTGTCCTGGAAAAGCTTTGCACTCCACCTAGACACGTGCCTCAGCT
CTAG

Translation (257 aa):
MGLPQLWLWLKRLVIFLQVALEVAVGKVLMTLFPGRVKQSILAMGQKTGMARNPRFAPDNWVPTFFSIQY
FWFVLKVRWQRLEDRAEFGGLAPNCTVVCLSGQKCNIWDFIQGSRPLVLNFGSCTUPSFLLKFDQFKRLV
DDFASTADFLIIYIEEAHATDGWAFKNNVDIRQHRSLQERVRAARMLLARSPQCPVVVDTMQNQSSQLYA
ALPERLYVIQEGRICYKGKAGPWNYNPEEVRAVLEKLCTPPRHVPQL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH