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Report for CCDS18493.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18493.1 Public Mus musculus 4 Cyp4b1 23 108 98 CCDS HistoryNCBI Gene:13120Re-query CCDS DB by CCDS ID:18493.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18493.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102707.9 ENSMUSP00000099768.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102707.9Link to Ensembl Protein Viewer:ENSMUSP00000099768.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000102707Re-query CCDS DB by Protein ID:ENSMUSP00000099768
Original member Current member NCBI NM_007823.3 NP_031849.1 Accepted alive Link to Nucleotide Sequence:NM_007823.3Link to Protein Sequence:NP_031849.1Re-query CCDS DB by Nucleotide ID:NM_007823Re-query CCDS DB by Protein ID:NP_031849Link to BLAST:NP_031849.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031849.1 511 Q64462 511 100% 0 0

Chromosomal Locations for CCDS 18493.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 115625045 115625228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 115625646 115625728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 115625824 115625888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 115626807 115626940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 115628669 115628859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 115635632 115635738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 115635874 115636025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 115636264 115636388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 115640305 115640432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 115641617 115641661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 115641846 115641987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 115647508 115647687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1536 nt):
ATGGCGCTCAGCTTTCTCTCTCCAAGCCTTTCCCGCCTCGGCCTGTGGGCTTCTGTAGTGATCCTGATGG
TAACCGTCCTGAAGCTCCTCAGCCTGCTGTTTCGGAGGCAGAAGCTGGCCAGGGCTTTGGACAGCTTCCC
AGGGCCCCCCAAGCACTGGCTTTTTGGTCATGCCCTTGAGATCCAGAAGACAGGAGGCCTGGACAAGGTG
GTAACTTGGACCGAACAGTTCCCCTATGCCCACCCACTCTGGCTTGGACAATTTATTGTTTTCCTGAACA
TCTATGAGCCTGACTATGCTAAAGCTGTATACAGCCGAGGGGACCCGAAGGCTGCATATGTGTATGACTT
CTTCCTCCAGTGGATCGGAAAAGGCCTACTGGTTCTGGAAGGGCCAAAATGGTTCCAGCACCGCAAGCTG
CTCACACCTGGCTTCCATTATGATGTGCTGAAGCCCTATGTGGCCATATTTGCTGAGTCCACACGGGTGA
TGCTGGACAAGTGGGAGAAAAAGGCTAGTGAGAATAAGAGCTTTGACATCTTCTGTGACGTGGGCCACAT
GGCACTGGACACCCTCATGAAGTGCACCTTTGGCAAAGGAGACAGCGGCCTAAGCCACAGTGACAACAGC
TACTACCTGGCAGTTAGTGACCTCACACTGCTGATGCAGCAGCGCATCGACTCCTTCCAGTACCATAATG
ACTTCATTTACTGGCTCACACCACATGGCCGCCGTTTCTTGCGGGCCTGCCAGATAGCCCATGACCATAC
AGATCATGTCATCAGGCAGCGGAAGGCAGCTCTGCAGGATGAGAAGGAGCAGAAAAAGCTTCAGGAGCGG
AGACACCTGGACTTCCTCGACATTCTCCTGGGTGCCCGGGATGAAAGTGGGATCAAGTTGTCAGATGCAG
ACCTCCGGGCTGAAGTGGACACATTCATGTTCGAAGGCCACGACACCACCACTAGTGGTATCTCTTGGTT
TCTCTACTGCATGGCCCTTTATCCTATGCACCAGCAGCGATGTAGGGAGGAGGTCCGTGAGATCCTAGGG
GACCGGGACTCCTTCCAGTGGGATGATCTGGCCCAGATGACCTACCTGACCATGTGCATGAAGGAGTGCT
TCCGCCTCTACCCACCTGTACCCCAAGTGTACCGCCAGCTCAGCAAGCCAGTAACCTTTGTGGATGGCCG
CTCTCTACCTGCAGGCAGCCTGATCTCTCTGCACATCTATGCCCTCCATCGGAACAGTGCTGTGTGGCCT
GACCCAGAGGTCTTTGACCCACTGCGCTTTTCTCCTGAGAATATGACAGGACGGCATCCCTTTGCCTTCA
TGCCTTTTTCTGCAGGGCCCAGGAATTGCATTGGGCAGCAGTTTGCTATGAACGAGATGAAGGTGGTCAC
AGCCCTCTGTTTGCTGCGCTTTGAATTCTCTCCAGATCCCTCAAAGATCCCCATTAAGGTCCCCCAGCTG
ATCTTGCGCTCCAAAAATGGCATCCACCTCTACCTGAAGCCACTGGGCCCTGGGTCTGGAAAGTAG

Translation (511 aa):
MALSFLSPSLSRLGLWASVVILMVTVLKLLSLLFRRQKLARALDSFPGPPKHWLFGHALEIQKTGGLDKV
VTWTEQFPYAHPLWLGQFIVFLNIYEPDYAKAVYSRGDPKAAYVYDFFLQWIGKGLLVLEGPKWFQHRKL
LTPGFHYDVLKPYVAIFAESTRVMLDKWEKKASENKSFDIFCDVGHMALDTLMKCTFGKGDSGLSHSDNS
YYLAVSDLTLLMQQRIDSFQYHNDFIYWLTPHGRRFLRACQIAHDHTDHVIRQRKAALQDEKEQKKLQER
RHLDFLDILLGARDESGIKLSDADLRAEVDTFMFEGHDTTTSGISWFLYCMALYPMHQQRCREEVREILG
DRDSFQWDDLAQMTYLTMCMKECFRLYPPVPQVYRQLSKPVTFVDGRSLPAGSLISLHIYALHRNSAVWP
DPEVFDPLRFSPENMTGRHPFAFMPFSAGPRNCIGQQFAMNEMKVVTALCLLRFEFSPDPSKIPIKVPQL
ILRSKNGIHLYLKPLGPGSGK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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