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Report for CCDS19862.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19862.1 Public Mus musculus 5 Cyp3a16 23 108 98 CCDS HistoryNCBI Gene:13114Re-query CCDS DB by CCDS ID:19862.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19862.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031633.4 ENSMUSP00000031633.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031633.4Link to Ensembl Protein Viewer:ENSMUSP00000031633.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000031633Re-query CCDS DB by Protein ID:ENSMUSP00000031633
Original member Current member NCBI NM_007820.2 NP_031846.2 Accepted alive Link to Nucleotide Sequence:NM_007820.2Link to Protein Sequence:NP_031846.2Re-query CCDS DB by Nucleotide ID:NM_007820Re-query CCDS DB by Protein ID:NP_031846Link to BLAST:NP_031846.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031846.2 504 Q64481 504 100% 0 0

Chromosomal Locations for CCDS 19862.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 145436441 145436536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 145440357 145440519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 145441954 145442180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 145450150 145450310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 145451798 145451867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 145452756 145452883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 145455474 145455622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 145455894 145455982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 145456062 145456175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 145463069 145463168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 145465033 145465085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 145467467 145467560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 145469570 145469640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1515 nt):
ATGAACCTATTTTCAGCGCTCTCACTGGATACATTGGTCCTCCTGGCAATCATCCTGGTGCTCCTCTACC
GATATGGGACCTGTACACATGGACTTTTTAAGAAACAGGGAATTCCTGGGCCCAAACCTCTGCCATTTTT
AGGCACTGTCCTGAATTATTACAAGGGTTTATGGAAATTTGACATGGAGTGCTATGAAAAGTATGGAAAA
ACGTGGGGGTTGTTTGATGGTCAAATACCTCTCTTTGTCATCACGGACCCAGAGACGATTAAGAATGTGC
TAGTGAAGGAATGTTTTTCTGTCTTCACAAACCGGCAGGATTTTTTCCCAGTGGGGATAATGAGTAAATC
CATCTCTCTAGCTAAAGATGAGGAATGGAAGAGATATAGAGCTTTGCTGTCCCCCACATTCACCAGTGGA
AATCTCAAGGAGATGTTTCCTGTCATTGAACAGTATGGAGACATTTTGGTAAAGTACTTGAGGCAAGAGG
CAGAGAAAGGCAAGCCTGTTGCTGTGAAAGATGTGTTAGGTGCCTACAGCATGGATGTGATCATCAGCAC
AACATTTGGAGTGAACATAGATTCCCTCAACAACCCAGAGGATCCTTTTGTGGAGAATGCCAAGAAGGTT
TTAAGATTTGATTATTTTGATCCTTTGTCCTTGTCAGTAGCACTCTTTCCATTCCTCACACCAATATATG
AGATGTTAAATATCTGCATGTTCCCAAAGGATTCAATAGAATTTTTCAAAAAATTTGTGGATAGAATGAC
AGAAAACCGCCTGGATTCTAAGCAGAAGCACCGCGTGGACTTTATTTATCTGATGATGGAAGCTTATAAT
AAGTCAAAAGACAAAGACTCTCATAAAGCCCTTTCTGAAATCGAGATCACAGCCCAGTCAATTATTTTTA
TTTTTGCTGGGTATGAAACCACCAGCAGCATACTTTCCTTCACCGTGTATTCCTTGGCCACTCACCCTGA
TATCCAGAAGAAACTGCAGGAGGAGATCGATGAGGCTCTGCCCAATAAGGCACCTCCCACCTATGATACC
GTGATGGCGATGGAATACCTGGATATGGTGCTGAATGAAACCCTCAGATTATATCCCATTACTAATAGAC
TTCAGAGAGTCTGTAAAAAGGATGTTGAAATCAATGGTATTTATATCCCGAAAGGGTCAACAGTGATAAT
TCCATCTTATGTTCTTCACCATGACCCACAGCACTGGCCAGAGCCTGAAGAATTCCAACCTGAAAGGTTC
AGCAAGGAGAACAAGGGCAGCATTGATCCTTATGTATATCTGCCCTTTGGGAATGGACCCAGGAACTGCA
TTGGCATGAGGTTTGCTCTCATGAATATGAAACTTGCTCTCATTAAAGTTCTGCAGAACTTCTCCTTCCA
GCCTTGTAAGGAAACACAGATACCTCTGAAATTAAGCAGAGAACTACTTCTTCAACCAGTAAAACCCATT
GTTCTAAAGGTTGTGCCACGGGATGCAGTCATAACTGGAGCGTGA

Translation (504 aa):
MNLFSALSLDTLVLLAIILVLLYRYGTCTHGLFKKQGIPGPKPLPFLGTVLNYYKGLWKFDMECYEKYGK
TWGLFDGQIPLFVITDPETIKNVLVKECFSVFTNRQDFFPVGIMSKSISLAKDEEWKRYRALLSPTFTSG
NLKEMFPVIEQYGDILVKYLRQEAEKGKPVAVKDVLGAYSMDVIISTTFGVNIDSLNNPEDPFVENAKKV
LRFDYFDPLSLSVALFPFLTPIYEMLNICMFPKDSIEFFKKFVDRMTENRLDSKQKHRVDFIYLMMEAYN
KSKDKDSHKALSEIEITAQSIIFIFAGYETTSSILSFTVYSLATHPDIQKKLQEEIDEALPNKAPPTYDT
VMAMEYLDMVLNETLRLYPITNRLQRVCKKDVEINGIYIPKGSTVIIPSYVLHHDPQHWPEPEEFQPERF
SKENKGSIDPYVYLPFGNGPRNCIGMRFALMNMKLALIKVLQNFSFQPCKETQIPLKLSRELLLQPVKPI
VLKVVPRDAVITGA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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