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Report for CCDS18371.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18371.1 Public Mus musculus 4 Cyp2j5 23 108 98 CCDS HistoryNCBI Gene:13109Re-query CCDS DB by CCDS ID:18371.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18371.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030299.7 ENSMUSP00000030299.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030299.7Link to Ensembl Protein Viewer:ENSMUSP00000030299.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000030299Re-query CCDS DB by Protein ID:ENSMUSP00000030299
Original member NCBI NM_010007.4 NP_034137.1 Updated not alive Link to Nucleotide Sequence:NM_010007.4Link to Protein Sequence:NP_034137.1Re-query CCDS DB by Nucleotide ID:NM_010007Re-query CCDS DB by Protein ID:NP_034137
Current member NCBI NM_010007.5 NP_034137.1 Accepted alive Link to Nucleotide Sequence:NM_010007.5Link to Protein Sequence:NP_034137.1Re-query CCDS DB by Nucleotide ID:NM_010007Re-query CCDS DB by Protein ID:NP_034137Link to BLAST:NP_034137.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034137.1 501 O54749 501 100% 0 0

Chromosomal Locations for CCDS 18371.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 96629468 96629646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 96630711 96630849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 96634148 96634335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 96635794 96635932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 96641272 96641448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 96658592 96658752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 96659481 96659630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 96663112 96663274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 96663801 96664010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1506 nt):
ATGATTATGTTTTTGAGCTCCCTGGTGACCACCTTCTGGGAAGCACTCCATCTCAAGACTCTGGTACTGG
CTGTTGTCACTTTCCTGTTCCTGATTAACATCCTCAGAAGCCGTCACCCCAAAAACTACCCACCAGGGCC
ATGGCGTCTGCCCTTTGTGGGCAACTTCTTTCAAATAGACACTAAGCAAACCCACTTGGTGCTTCAGCAG
TTTGTGAAGAAATATGGGAATGTATTTAGTCTGGAGTTGGGCCAATCACCAGTGGTGGTTGTATCAGGAC
TGCCTTTAATCAAAGAAATGTTTACCCACCTGGACCAAAATTTTGTGAATCGCTTTATGACACCGGTTAG
AGAACGAATCACAGGTAAAAATGGATTAGTCGTATCTAATGGCCAGACATGGAAGGAGCAAAGGAGGCTT
GCCCTGATGGCACTGAGGAACTTTGGATTAGGAAAGAAGAGCTTGGAGGAGCGCATTCAGGAGGAGACCC
ATCACCTGGTGGAAGCCATAAGAGAGGAGGGAGGTCAACCTTTTAATCCTCATTTGAAGCTCATCAATGC
CGTTTCCAATATCATTTGCTCTGTCACCTTTGGGGAGCGCTTTGATTATGAGGACTGCCAGTTTCAGGAG
CTGCTGCAGTTACTAGATGAGACCATGCATTTGATGGGTTCATCAGCAGGCCAACTCTACAATGGCTTCC
CATGTATAATGAAATATCTTCCTGGACCACATCAGAAAATATTCAGAAATTGGGGAAAACTGAAATTGTT
TGTTTCTCATATTGTCAAGAAACACGAGAAAGATTGGAACCCAGATGAGCCAAGAGATTTCATTGATGCT
TTCCTAATAGAAATGCAAAAGGACCCTGATAGAACTACAAGTTTCAATGAAGAAAACCTTATCAGCACCA
CTCTGGACCTCTTTTTGGGTGGAACAGAGACAACATCCTCAACACTGCGATGGGCTTTGCTCTACATGAG
TAGCTATCCAGAAATCCAAGAAAATGTACAGGCGGAGATTGACAGAGTTATTGGCCACAAGAGGCAGGTG
AGCTTGTCTGACCGAGAGTCCATGCCCTACACCAATGCTGTCATCCATGAGGTCCAGAGGATGGGCAACA
TCGTCCCTTTGAATTCTTCCAGGGAAGTTACAGTTGACACCAAGTTTAATGGATTCCACCTGCCAAAGGG
AACCATGATCCTGACCAATTTGACTGCACTACACAGAGACCCCAAAGAGTGGGCCACTCCAGAAGTGTTC
AATCCAGAGCATTTTTTGGAGAATGGACAGTTTAAGAAGAGAGAATCCTTTCTGCCATTCTCAATGGGAA
AAAGAGCTTGTCTTGGAGAACAGTTGGCTAAATCTGAGCTGTTCATTTTTTTCTCTGCCCTTATGCAAAA
ATTTACCTTCAAGCCCCCAATCAATGAGAAGCTGAGCCTGAAGTTCAGAATGGGCCTCATCCTTTCTCCA
GCCAGCTACCGAATTTGTGCTATCCCTAGAGTGTGA

Translation (501 aa):
MIMFLSSLVTTFWEALHLKTLVLAVVTFLFLINILRSRHPKNYPPGPWRLPFVGNFFQIDTKQTHLVLQQ
FVKKYGNVFSLELGQSPVVVVSGLPLIKEMFTHLDQNFVNRFMTPVRERITGKNGLVVSNGQTWKEQRRL
ALMALRNFGLGKKSLEERIQEETHHLVEAIREEGGQPFNPHLKLINAVSNIICSVTFGERFDYEDCQFQE
LLQLLDETMHLMGSSAGQLYNGFPCIMKYLPGPHQKIFRNWGKLKLFVSHIVKKHEKDWNPDEPRDFIDA
FLIEMQKDPDRTTSFNEENLISTTLDLFLGGTETTSSTLRWALLYMSSYPEIQENVQAEIDRVIGHKRQV
SLSDRESMPYTNAVIHEVQRMGNIVPLNSSREVTVDTKFNGFHLPKGTMILTNLTALHRDPKEWATPEVF
NPEHFLENGQFKKRESFLPFSMGKRACLGEQLAKSELFIFFSALMQKFTFKPPINEKLSLKFRMGLILSP
ASYRICAIPRV


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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