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Report for CCDS17122.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17122.1 Public Mus musculus 2 Cyp24a1 23 108 98 CCDS HistoryNCBI Gene:13081Re-query CCDS DB by CCDS ID:17122.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17122.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000038824.5 ENSMUSP00000047954.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000038824.5Link to Ensembl Protein Viewer:ENSMUSP00000047954.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000038824Re-query CCDS DB by Protein ID:ENSMUSP00000047954
Original member Current member NCBI NM_009996.4 NP_034126.1 Accepted alive Link to Nucleotide Sequence:NM_009996.4Link to Protein Sequence:NP_034126.1Re-query CCDS DB by Nucleotide ID:NM_009996Re-query CCDS DB by Protein ID:NP_034126Link to BLAST:NP_034126.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034126.1 514 Q64441 514 100% 0 0

Chromosomal Locations for CCDS 17122.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 170485677 170485787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 170485887 170486084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 170486771 170486849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 170487874 170488040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 170490115 170490260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 170491588 170491699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 170492633 170492724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 170494076 170494172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 170495324 170495417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 170496174 170496364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 170496517 170496774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1545 nt):
ATGAGCTGCCCCATTGACAAAAGGCGCCCCCTGATCGCTTTCCTGCGCCGGCTGCGGGACCTCGGGCAAC
CCCCAAGGTCCGTGACATCCAAGGCGCACGTGAAGCGTGCGCCAAAAGAGGTGCCCCTCTGCCCGCTGAT
GACCGACGGTGAGACTCGGAACGTCACCTCCTTACCTGGACCCACCAACTGGCCACTGCTGGGCAGCCTA
CTGGAGATTTTTTGGAAAGGTGGCCTGAAGAAACAGCACGACACACTGGCAGAGTACCACAAGAAGTATG
GCCAGATTTTCCGGATGAAGCTGGGCTCCTTCGACTCGGTGCATCTGGGCTCGCCGAGCCTGCTGGAAGC
TCTGTACCGCACAGAGAGCGCGCATCCCCAGCGGCTAGAGATCAAACCCTGGAAAGCCTATCGGGACCAT
CGCAACGAAGCCTACGGGCTGATGATCCTGGAAGGACAGGAGTGGCAGCGGGTCCGCAGCGCCTTCCAAA
AGAAACTCATGAAGCCCGTGGAAATCATGAAGCTGGACAAGAAAATCAATGAGGTCTTGGCTGATTTTAT
GGGGCAAATCGATGAGCTGCGTGATGAGAGAGGCCGCATCCAAGACTTGTACAGCGAGCTGAACAAATGG
TCCTTTGAAAGCATCTGCCTTGTGTTATATGAGAAGAGATTCGGGCTCCTTCAAAAGGACACAGAGGAAG
AAGCCCTGACCTTCATTGCGGCCATCAAAACAATGATGAGCACATTTGGGAAGATGATGGTGACCCCCGT
GGAGCTGCACAAGCGCCTCAACACCAAAGTGTGGCAAGCGCACACGCTGGCCTGGGACACCATTTTCAAA
TCAGTCAAGCCCTGCATCGACCACCGCCTAGAGAGATATTCCCAGCAGCCTGGTGCGGATTTCCTTTGTG
ATATTTATCAGCAAGATCATCTTTCCAAGAAAGAACTGTACGCTGCTGTCACGGAGCTCCAGCTGGCTGC
AGTGGAGACGACCGCAAACAGCTTGATGTGGATTCTCTACAATCTATCCCGGAATCCCCAAGTGCAACAG
AGACTTCTCCGGGAAATCCAGAGCGTGCTGCCTGACAACCAGACGCCACGGGCGGAAGATGTGAGGAATA
TGCCCTATTTAAAGGCCTGTCTAAAGGAGTCCATGAGGCTTACCCCAAGTGTGCCATTCACAACTCGGAC
CCTTGACAAGCCAACCGTTCTGGGTGAATACACGCTACCCAAAGGAACAGTCTTAACACTAAATACCCAA
GTGCTGGGCTCTAGCGAAGACAATTTTGAAGATGCTGACAAGTTTAGACCCGAACGCTGGCTTGAAAAGG
AGAAAAAGATCAACCCCTTCGCTCATCTCCCATTTGGCGTCGGGAAGAGGATGTGCATCGGGCGCCGGCT
GGCTGAGCTACAGCTCCACTTGGCTCTTTGCTGGATAATCCAAAAATATAACATTGTGGCTACAGACAGT
GAACCTGTGGAGATGCTGCATCTTGGCATCCTGGTACCTAGCCGGGAGCTGCCCATTGCGTTCTGTCCAC
GGTAG

Translation (514 aa):
MSCPIDKRRPLIAFLRRLRDLGQPPRSVTSKAHVKRAPKEVPLCPLMTDGETRNVTSLPGPTNWPLLGSL
LEIFWKGGLKKQHDTLAEYHKKYGQIFRMKLGSFDSVHLGSPSLLEALYRTESAHPQRLEIKPWKAYRDH
RNEAYGLMILEGQEWQRVRSAFQKKLMKPVEIMKLDKKINEVLADFMGQIDELRDERGRIQDLYSELNKW
SFESICLVLYEKRFGLLQKDTEEEALTFIAAIKTMMSTFGKMMVTPVELHKRLNTKVWQAHTLAWDTIFK
SVKPCIDHRLERYSQQPGADFLCDIYQQDHLSKKELYAAVTELQLAAVETTANSLMWILYNLSRNPQVQQ
RLLREIQSVLPDNQTPRAEDVRNMPYLKACLKESMRLTPSVPFTTRTLDKPTVLGEYTLPKGTVLTLNTQ
VLGSSEDNFEDADKFRPERWLEKEKKINPFAHLPFGVGKRMCIGRRLAELQLHLALCWIIQKYNIVATDS
EPVEMLHLGILVPSRELPIAFCPR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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