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Report for CCDS28658.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28658.1 Public Mus musculus 17 Cyp21a1 23 108 98 CCDS HistoryNCBI Gene:13079Re-query CCDS DB by CCDS ID:28658.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28658.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025223.8 ENSMUSP00000025223.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025223.8Link to Ensembl Protein Viewer:ENSMUSP00000025223.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000025223Re-query CCDS DB by Protein ID:ENSMUSP00000025223
Original member Current member NCBI NM_009995.2 NP_034125.2 Accepted alive Link to Nucleotide Sequence:NM_009995.2Link to Protein Sequence:NP_034125.2Re-query CCDS DB by Nucleotide ID:NM_009995Re-query CCDS DB by Protein ID:NP_034125Link to BLAST:NP_034125.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034125.2 487 P03940 487 99.7947% 0 1

Chromosomal Locations for CCDS 28658.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 34801780 34802048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34802133 34802236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34802305 34802474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34802671 34802871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34802985 34803071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34803160 34803261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34803348 34803443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34803549 34803691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34804044 34804133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34804198 34804399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1464 nt):
ATGCTGCTACCTGGGCTGCTGCTGCTGTTGCTGCTGCTAGCTGGCACCCGCTGGCTGTGGGGCCAATGGA
AGCTCCGGAAGCTGCACCTCCCGCCTCTGGCCCCGGGTTTTCTGCACTTCCTACAGCCTAACCTTCCCAT
CTACCTGCTTGGCCTCACTCAGAAACTCGGGCCCATCTACAGGATCCGCTTGGGGATGCAAGATGTGGTG
GTGCTAAATTCTAACAGAACCATTGAGGAGGCCTTGATCCAAAAGTGGGTGGACTTTGCTGGCCGACCCC
ATATGCTAAATGGAAAGATGGACTTGGACCTGTCCCTGGGGGATTACTCTCTCATGTGGAAGGCCCACAA
GAAACTCTCTCGCTCAGCCCTGATGCTGGGCATGCGAGACTCCATGGAGCCTCTGATAGAGCAGCTGACC
CAGGAGTTCTGTGAGCGCATGCGAGCCCAGGCTGGCACCCCCGTGGCCATCCATAAGGAATTCTCCTTCC
TCACTTGTAGTATCATCTCCTGCCTCACTTTTGGAGACAAGGACAGCACGTTGGTACAGACCCTTCACGA
CTGTGTCCAGGACTTGTTGCAAGCCTGGAACCACTGGTCCATCCAAATCTTGACGATAATTCCCCTTCTC
AGGTTCCTCCCCAACCCAGGCCTCCAGAAGCTGAAGCAGATCCAAGAGAGTCGGGACCATATTGTCAAGC
AGCAGCTGAAGCGGCACAAGGACAGCCTGGTTGCAGGCCAATGGAAAGACATGATTGACTACATGCTCCA
GGGAGTGGAGAAGCAAAGGGATGGCAAAGACGAAGAGCGGCTCCACGAGGGGCACGTGCACATGTCGGTG
GTGGACCTGTTCATCGGCGGCACCGAGACCACGGCTACCACGCTCTCCTGGGCTGTGGCTTTCCTGCTTC
ACCACCCTGAGATCCAGAAGCGACTGCAGGAAGAGTTAGACCTCAAGCTGGGCCCAGGCTCCCAGCTCCT
GTACAGGAACCGAATGCAGCTGCCTCTGCTCATGGCCACCATTGCCGAGGTGCTGCGTTTGCGGCCTGTG
GTGCCCTTGGCCTTGCCCCATCGTGCAACTAGGGCTAGCAGCATCTCCGGCTATGACATCCCTAAGGATA
TGGTCATCATCCCCAACATCCAAGGCGCCAACCTGGATGAGATGGTTTGGGAACTGCCCAGCAAGTTCTG
GCCAGATCGCTTCCTGGAACCTGGGAAGAATCCCAGAACACCATCCTTTGGCTGTGGGGCACGCGTGTGC
CTGGGAGAGCCTCTGGCACGGCTGGAGCTCTTTGTGGTGCTGGCTCGTCTGCTGCAGGCCTTCACTCTGC
TGCCTCCACCAGATGGAACCCTGCCTTCCCTGCAGCCCCAGCCTTATGCTGGCATCAATCTCCCGATTCC
TCCTTTCCAGGTGCGGCTGCAGCCCAGAAACCTGGCGCCCCAAGACCAGGGTGAGCGTCCTTGA

Translation (487 aa):
MLLPGLLLLLLLLAGTRWLWGQWKLRKLHLPPLAPGFLHFLQPNLPIYLLGLTQKLGPIYRIRLGMQDVV
VLNSNRTIEEALIQKWVDFAGRPHMLNGKMDLDLSLGDYSLMWKAHKKLSRSALMLGMRDSMEPLIEQLT
QEFCERMRAQAGTPVAIHKEFSFLTCSIISCLTFGDKDSTLVQTLHDCVQDLLQAWNHWSIQILTIIPLL
RFLPNPGLQKLKQIQESRDHIVKQQLKRHKDSLVAGQWKDMIDYMLQGVEKQRDGKDEERLHEGHVHMSV
VDLFIGGTETTATTLSWAVAFLLHHPEIQKRLQEELDLKLGPGSQLLYRNRMQLPLLMATIAEVLRLRPV
VPLALPHRATRASSISGYDIPKDMVIIPNIQGANLDEMVWELPSKFWPDRFLEPGKNPRTPSFGCGARVC
LGEPLARLELFVVLARLLQAFTLLPPPDGTLPSLQPQPYAGINLPIPPFQVRLQPRNLAPQDQGERP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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