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Report for CCDS30010.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30010.1 Public Mus musculus X Cybb 23 108 98 CCDS HistoryNCBI Gene:13058Re-query CCDS DB by CCDS ID:30010.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30010.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000015484.9 ENSMUSP00000015484.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000015484.9Link to Ensembl Protein Viewer:ENSMUSP00000015484.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000015484Re-query CCDS DB by Protein ID:ENSMUSP00000015484
Original member Current member NCBI NM_007807.5 NP_031833.3 Accepted alive Link to Nucleotide Sequence:NM_007807.5Link to Protein Sequence:NP_031833.3Re-query CCDS DB by Nucleotide ID:NM_007807Re-query CCDS DB by Protein ID:NP_031833Link to BLAST:NP_031833.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031833.3 570 Q61093 570 100% 0 0

Chromosomal Locations for CCDS 30010.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 9438217 9438343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 9439895 9440019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 9442533 9442679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 9444548 9444710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 9446693 9446946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 9449641 9449733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 9450682 9450811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 9453586 9453776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 9455134 9455279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 9456960 9457044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 9465644 9465754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 9467083 9467178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 9469206 9469250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1713 nt):
ATGGGGAACTGGGCTGTGAATGAAGGACTCTCCATCTTTGTCATTCTGGTGTGGTTGGGGCTGAATGTCT
TCCTCTTTATCAACTACTACAAGGTTTATGATGATGGGCCTAAGTATAATTATACTCGAAAACTCCTTGG
GTCAGCACTGGCTCTGGCCCGGGCACCTGCAGCCTGCCTGAATTTCAACTGTATGCTGATCCTGCTGCCA
GTGTGTCGAAATCTGCTCTCCTTTCTCAGGGGTTCCAGTGCGTGTTGCTCGACAAGGATTCGAAGACAAC
TGGACAGGAACCTCACTTTCCATAAGATGGTAGCTTGGATGATAGCACTGCACACCGCCATCCACACAAT
TGCACATCTCTTCAACGTTGAGTGGTGTGTGAATGCCAGAGTCGGGATTTCTGACCGGTATTCAATAGCT
CTCTCTGACATCGGTGACAATGAGAACGAAGAGTATCTCAATTTTGCTAGAGAAAAAATCAAGAACCCTG
AAGGGGGCCTGTATGTGGCCGTGACTCGGTTGGCTGGGATCACAGGAATTGTCATCACACTGTGTCTCAT
ATTGATTATCACATCCTCTACCAAAACCATTCGGAGGTCTTATTTTGAAGTGTTCTGGTATACACACCAT
CTCTTTGTGATCTTCTTCATCGGCCTTGCCATCCATGGAGCTGAACGAATTGTACGTGGACAGACTGCGG
AGAGTTTGGAAGAGCATAATTTAGATATCTGTGCAGACAAAATCGAAGAATGGGGAAAAATAAAGGAGTG
CCCAGTACCAAAGTTCGCTGGAAACCCTCCTATGACTTGGAAATGGATAGTGGGTCCTATGTTCCTGTAC
CTTTGTGAGAGGTTGGTTCGGTTTTGGCGATCTCAGCAAAAGGTGGTCATCACCAAGGTGGTCACCCACC
CTTTCAAAACCATTGAGCTTCAGATGAAGAAGAAGGGATTCAAGATGGAGGTGGGACAGTACATTTTTGT
CAAGTGCCCCAAGGTATCCAAGTTAGAATGGCACCCATTCACACTGACCTCTGCTCCTGAGGAAGACTTT
TTTAGCATCCATATCCGTATTGTGGGAGACTGGACGGAGGGGCTATTCAATGCTTGTGGCTGTGATAAGC
AGGAGTTCCAAGATGCCTGGAAACTACCTAAGATAGCAGTTGATGGACCCTTTGGTACAGCCAGTGAAGA
TGTGTTCAGCTATGAGGTGGTGATGTTAGTGGGAGCCGGGATTGGAGTCACGCCCTTTGCCTCCATTCTC
AAGTCTGTCTGGTACAAATATTGTGATAATGCCACCAGTCTGAAACTCAAAAAGATCTACTTCTACTGGC
TGTGCAGGGACACGCATGCCTTTGAGTGGTTTGCAGACCTGCTGCAGCTGCTGGAGACCCAGATGCAGGA
AAGGAACAATGCCAACTTCCTCAGCTACAATATCTACCTTACTGGCTGGGATGAATCTCAGGCCAATCAC
TTTGCTGTGCACCATGATGAGGAGAAAGATGTGATCACAGGCCTAAAACAGAAGACTCTGTATGGACGGC
CCAACTGGGATAACGAGTTCAAGACCATTGCAAGTGAACACCCTAACACCACAATAGGCGTTTTCCTGTG
TGGCCCTGAAGCCTTGGCTGAAACTCTCAGTAAACAGAGCATCTCCAACTCAGAATCCGGCCCGCGTGGA
GTCCACTTCATTTTCAACAAGGAAAACTTCTAA

Translation (570 aa):
MGNWAVNEGLSIFVILVWLGLNVFLFINYYKVYDDGPKYNYTRKLLGSALALARAPAACLNFNCMLILLP
VCRNLLSFLRGSSACCSTRIRRQLDRNLTFHKMVAWMIALHTAIHTIAHLFNVEWCVNARVGISDRYSIA
LSDIGDNENEEYLNFAREKIKNPEGGLYVAVTRLAGITGIVITLCLILIITSSTKTIRRSYFEVFWYTHH
LFVIFFIGLAIHGAERIVRGQTAESLEEHNLDICADKIEEWGKIKECPVPKFAGNPPMTWKWIVGPMFLY
LCERLVRFWRSQQKVVITKVVTHPFKTIELQMKKKGFKMEVGQYIFVKCPKVSKLEWHPFTLTSAPEEDF
FSIHIRIVGDWTEGLFNACGCDKQEFQDAWKLPKIAVDGPFGTASEDVFSYEVVMLVGAGIGVTPFASIL
KSVWYKYCDNATSLKLKKIYFYWLCRDTHAFEWFADLLQLLETQMQERNNANFLSYNIYLTGWDESQANH
FAVHHDEEKDVITGLKQKTLYGRPNWDNEFKTIASEHPNTTIGVFLCGPEALAETLSKQSISNSESGPRG
VHFIFNKENF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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